Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_18855 and PS417_18860 are separated by 164 nucleotidesPS417_18860 and PS417_18865 are separated by 82 nucleotidesPS417_18865 and PS417_18870 are separated by 59 nucleotidesPS417_18870 and PS417_18875 are separated by 16 nucleotides PS417_18855: PS417_18855 - peptidase, at 4,085,827 to 4,086,366 _18855 PS417_18860: PS417_18860 - transcriptional regulator, at 4,086,531 to 4,086,914 _18860 PS417_18865: PS417_18865 - hypothetical protein, at 4,086,997 to 4,087,647 _18865 PS417_18870: PS417_18870 - hypothetical protein, at 4,087,707 to 4,088,282 _18870 PS417_18875: PS417_18875 - hypothetical protein, at 4,088,299 to 4,088,589 _18875
Group Condition PS417_18855 PS417_18860 PS417_18865 PS417_18870 PS417_18875
phage P. simiae OR Antrim MOI 0.1 -0.2 -0.7 -0.6 -0.3 N.D.
carbon source 2'-Deoxyinosine 5 mM (C) -0.3 -1.2 -0.3 +0.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 -0.7 -0.6 -0.0 N.D.
phage P. simiae Grant Run MOI 10 -0.2 -0.7 -0.6 -0.3 N.D.
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -0.5 -1.0 +0.2 -0.1 N.D.
rhizosphere rhizosphere sample 8; outgrowth in LB +0.2 -1.2 -0.5 +0.3 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 +0.7 -1.3 -0.4 N.D.
soil soil sample 5; outgrowth in LB -1.1 -0.8 +0.6 +0.4 N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x -0.4 -0.8 +0.4 -0.1 N.D.
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -0.6 -0.6 +0.3 -0.0 N.D.
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) +0.4 -1.1 -0.2 +0.1 N.D.
soil soil sample 6; outgrowth in LB +0.2 -1.3 +0.3 +0.4 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.1 +0.7 -0.6 -0.1 N.D.
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x -0.1 -0.6 +0.8 -0.1 N.D.
soil soil sample 4; outgrowth in LB +0.3 -0.1 -0.7 +0.6 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 +0.8 -0.6 +0.1 N.D.
root root sample 6; outgrowth in LB +0.3 -0.9 +0.2 +0.8 N.D.
motility_chemotaxis Method=Plug_approach; Chemical=None; Chemical_conc=0mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.1 +0.9 -0.5 +0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.5 +0.3 -0.5 +0.5 N.D.
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 -0.3 +0.8 -0.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.6 +0.5 -0.4 -0.0 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 +1.2 -0.1 -0.0 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.3 +1.1 -0.2 -0.2 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.2 +1.4 -0.5 -0.1 N.D.
rhizosphere rhizosphere sample 2; outgrowth in LB +0.8 -0.7 +0.4 +0.7 N.D.
seeds Growth on radish seeds for 72 hours -0.3 +0.9 +0.3 +0.4 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.3 +1.4 -0.2 -0.2 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.2 +1.3 +0.1 +0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.8 +0.9 +0.0 -0.0 N.D.
seeds Growth on radish seeds for 72 hours +0.1 +1.4 +0.2 +0.3 N.D.
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