Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 554 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_18850	PS417_18855	PS417_18860	PS417_18865	PS417_18870
carbon source	2'-Deoxyinosine 5 mM (C)	-0.5	-0.3	-1.2	-0.3	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.4	-0.7	-0.6	-0.0
phage	P. simiae OR Antrim MOI 0.1	-0.2	-0.2	-0.7	-0.6	-0.3
soil	soil sample 5; outgrowth in LB	-0.6	-1.1	-0.8	+0.6	+0.4
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	+0.6	-0.5	-1.0	+0.2	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+0.2	+0.7	-1.3	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-1.0	-0.4	+0.1	+0.3	+0.2
carbon source	RCH2_defined_glucose with MS_media 1x	+0.4	-0.3	-0.9	+0.2	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.4	-0.1	+0.7	-0.6	-0.1
exudates	RCH2_defined_glucose with Brachypodium distachyon 27-day exudates 1x	+0.5	-0.2	-1.0	+0.3	-0.1
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x	+0.5	-0.4	-0.8	+0.4	-0.1
rhizosphere	rhizosphere sample 8; outgrowth in LB	+1.0	+0.2	-1.2	-0.5	+0.3
phage	Wcs_1	+0.5	+0.3	-0.8	+0.0	-0.1
soil	soil sample 6; outgrowth in LB	+0.3	+0.2	-1.3	+0.3	+0.4
phage	P. simiae OR1 MOI 0.1	+0.9	-0.5	+0.1	-0.6	-0.0
soil	soil sample 8; outgrowth in LB	+0.7	+0.0	-1.0	+0.1	+0.4
root	root sample 6; outgrowth in LB	-0.2	+0.3	-0.9	+0.2	+0.8
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	+0.3	-0.1	-0.6	+0.8	-0.1
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.2	+0.5	+0.3	-0.5	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.1	+0.3	+1.1	-0.2	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	+0.1	+0.8	-0.6	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	-0.4	+1.2	-0.1	-0.0
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	+0.3	-0.3	+0.8	-0.1
carbon source	Carbon source D-Mannitol 2.5 mM	+0.5	-0.4	+0.4	+0.5	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.1	+0.2	+1.4	-0.5	-0.1
seeds	Growth on radish seeds for 72 hours	+0.3	-0.3	+0.9	+0.3	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.3	+0.3	+1.4	-0.2	-0.2
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.7	+0.8	-0.7	+0.4	+0.7
seeds	Growth on radish seeds for 72 hours	-0.1	+0.1	+1.4	+0.2	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6	+0.8	+0.9	+0.0	-0.0