Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_18840	PS417_18845	PS417_18850	PS417_18855	PS417_18860
soil	soil sample 5; outgrowth in LB	-0.0	-0.8	-0.6	-1.1	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.2	+0.7	-0.3	-0.4	-0.7
carbon source	2-Deoxy-D-ribonic lithium salt 10 mM (C)	-0.3	-0.5	+0.0	+0.4	-1.1
soil	soil sample 6; outgrowth in LB	-0.1	-0.5	+0.3	+0.2	-1.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.6	+0.5	-1.0	-0.4	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	-0.9	-0.2	+0.1	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-2.7	+0.5	+0.2	+0.2	+0.7
phage	Wcs_1	-0.5	-0.4	+0.5	+0.3	-0.8
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.2	-0.8	-0.4	-0.1	+0.8
phage	P. simiae OR Antrim MOI 10	-0.4	-0.5	+0.8	-0.1	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	-1.0	-0.5	+0.3	+0.2
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	+0.2	+0.2	+0.6	-0.5	-1.0
phage	P. simiae OR1 MOI 0.1	-0.0	-0.9	+0.9	-0.5	+0.1
seeds	Growth on radish seeds for 72 hours	-0.9	-0.2	+0.3	-0.3	+0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.7	-0.3	+0.5	+0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-2.2	+0.7	+0.6	+0.1	+0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.8	-0.6	+0.2	+0.6	+0.5
soil	soil sample 8; outgrowth in LB	-0.2	+0.6	+0.7	+0.0	-1.0
rhizosphere	rhizosphere sample 8; outgrowth in LB	-0.4	+0.7	+1.0	+0.2	-1.2
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.4	-0.1	+0.7	+0.8	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	-0.5	+0.3	+0.3	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	+0.6	-0.4	+0.2	+0.7
soil	soil sample 7; outgrowth in LB	+0.0	+1.2	+0.4	-0.1	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	+0.7	+0.2	+0.4	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.2	+0.6	-0.1	+0.3	+1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	+1.2	+0.3	+0.0	+0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.7	+0.8	+0.3	+0.3	+1.4
seeds	Growth on radish seeds for 72 hours	+0.1	+0.7	-0.1	+0.1	+1.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.2	+0.8	+0.4	+0.3	+0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7	+1.7	+0.6	+0.8	+0.9