Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_01865 and PS417_01870 overlap by 1 nucleotidesPS417_01870 and PS417_01875 are separated by 144 nucleotidesPS417_01875 and PS417_01880 are separated by 105 nucleotidesPS417_01880 and PS417_01885 are separated by 12 nucleotides PS417_01865: PS417_01865 - sterol-binding protein, at 414,389 to 415,012 _01865 PS417_01870: PS417_01870 - ubiquinone biosynthesis methyltransferase UbiE, at 415,012 to 415,782 _01870 PS417_01875: PS417_01875 - polyhydroxyalkanoic acid system protein, at 415,927 to 416,202 _01875 PS417_01880: PS417_01880 - poly(3-hydroxyalkanoate) granule-associated protein PhaI, at 416,308 to 416,730 _01880 PS417_01885: PS417_01885 - poly(3-hydroxyalkanoate) granule-associated protein PhaF, at 416,743 to 417,726 _01885
Group Condition PS417_01865 PS417_01870 PS417_01875 PS417_01880 PS417_01885
carbon source Gly-Glu (C) N.D. N.D. -0.9 -0.4 -1.5
soil soil sample 2; outgrowth in LB N.D. N.D. -1.4 +0.2 -0.6
liquid stress Fraxetin 3 mM; liquid stress N.D. N.D. -1.0 +0.1 -0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. -1.0 +0.2 -0.5
soil soil sample 7; outgrowth in LB N.D. N.D. +0.2 -0.6 -0.9
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. -1.1 +0.2 -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. -1.1 -0.3 +0.2
supernatant control Vogels_fungal_media 0.1X N.D. N.D. -1.2 -0.0 +0.3
carbon source 2'-Deoxyinosine 5 mM (C) N.D. N.D. -1.1 -0.3 +0.6
carbon source L-Valine (C) N.D. N.D. +1.1 -0.5 -0.6
carbon source 2'-Deoxyinosine 5 mM (C) N.D. N.D. +1.3 -0.7 -0.5
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. N.D. -0.8 +0.3 +0.6
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. N.D. -0.8 +0.7 +0.3
stress Gentamicin 0.008 mg/ml N.D. N.D. -0.6 +0.6 +0.4
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. N.D. -0.6 +0.3 +0.7
phage JP1 MOI 1 N.D. N.D. +1.2 -0.3 -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. +1.2 +0.0 -0.5
phage JP1 MOI 10 N.D. N.D. +0.6 -0.3 +0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. +1.1 -0.4 +0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days N.D. N.D. +1.3 -0.4 +0.4
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. +0.2 +0.3 +1.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. +0.7 +0.4 +0.5
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB N.D. N.D. +0.8 +0.4 +0.5
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. N.D. +0.1 +0.4 +1.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. +1.1 +0.1 +0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. N.D. -0.4 -0.0 +2.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. +1.3 +0.2 +0.4
seeds Growth on radish seeds for 72 hours N.D. N.D. +0.5 +0.3 +1.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. +1.1 +0.5 +0.6
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X N.D. N.D. +2.1 +0.4 +0.4
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