Fitness for 5 genes in Pseudomonas simiae WCS417

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 554 experiments or choose conditions or try the comparative fitness browser

500 ntPS417_01860 and PS417_01865 overlap by 4 nucleotidesPS417_01865 and PS417_01870 overlap by 1 nucleotidesPS417_01870 and PS417_01875 are separated by 144 nucleotidesPS417_01875 and PS417_01880 are separated by 105 nucleotides PS417_01860: PS417_01860 - ubiquinone biosynthesis protein UbiB, at 412,788 to 414,392 _01860 PS417_01865: PS417_01865 - sterol-binding protein, at 414,389 to 415,012 _01865 PS417_01870: PS417_01870 - ubiquinone biosynthesis methyltransferase UbiE, at 415,012 to 415,782 _01870 PS417_01875: PS417_01875 - polyhydroxyalkanoic acid system protein, at 415,927 to 416,202 _01875 PS417_01880: PS417_01880 - poly(3-hydroxyalkanoate) granule-associated protein PhaI, at 416,308 to 416,730 _01880
Group Condition PS417_01860 PS417_01865 PS417_01870 PS417_01875 PS417_01880
carbon source 2'-Deoxyinosine 5 mM (C) N.D. N.D. N.D. -1.1 -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -1.1 -0.3
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. N.D. -0.7 -0.6
carbon source Gly-Glu (C) N.D. N.D. N.D. -0.9 -0.4
soil soil sample 2; outgrowth in LB N.D. N.D. N.D. -1.4 +0.2
supernatant control Vogels_fungal_media 0.1X N.D. N.D. N.D. -1.2 -0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. N.D. N.D. -0.8 -0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. -1.1 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -1.0 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -1.0 +0.2
phage P. simiae OR Antrim MOI 10 N.D. N.D. N.D. -0.8 +0.3
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. N.D. N.D. -0.8 +0.3
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. N.D. N.D. -0.8 +0.7
stress Gentamicin 0.008 mg/ml N.D. N.D. N.D. -0.6 +0.6
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB N.D. N.D. N.D. -0.5 +0.7
carbon source 2'-Deoxyinosine 5 mM (C) N.D. N.D. N.D. +1.3 -0.7
carbon source L-Valine (C) N.D. N.D. N.D. +1.1 -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. +1.1 -0.4
phage JP1 MOI 1 N.D. N.D. N.D. +1.2 -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days N.D. N.D. N.D. +1.3 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. +1.1 -0.1
soil soil sample 5; outgrowth in LB N.D. N.D. N.D. +1.0 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. +1.1 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. N.D. +1.0 +0.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB N.D. N.D. N.D. +0.8 +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. +1.2 +0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. +1.0 +0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. +1.3 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. +1.1 +0.5
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X N.D. N.D. N.D. +2.1 +0.4
remove
PS417_01860
plot		 remove
PS417_01865
plot		 remove
PS417_01870		 remove
PS417_01875
plot		 remove
PS417_01880
plot