Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_18765 and PS417_18770 are separated by 298 nucleotidesPS417_18770 and PS417_18775 are separated by 27 nucleotidesPS417_18775 and PS417_18780 are separated by 8 nucleotidesPS417_18780 and PS417_18790 are separated by 180 nucleotides PS417_18765: PS417_18765 - hypothetical protein, at 4,070,548 to 4,070,781 _18765 PS417_18770: PS417_18770 - hypothetical protein, at 4,071,080 to 4,072,063 _18770 PS417_18775: PS417_18775 - 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase, at 4,072,091 to 4,073,119 _18775 PS417_18780: PS417_18780 - flavin reductase, at 4,073,128 to 4,073,637 _18780 PS417_18790: PS417_18790 - amino acid transporter LysE, at 4,073,818 to 4,074,426 _18790
Group Condition PS417_18765 PS417_18770 PS417_18775 PS417_18780 PS417_18790
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.4 -0.1 -0.2 -2.0 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.7 -0.1 +0.1 -1.9 -0.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X +0.1 -1.4 -1.3 +0.1 +0.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X -0.0 -1.0 -1.2 +0.2 +0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 +0.1 -0.5 -1.5 +0.0
phage JP1 MOI 10 -0.6 +0.5 -1.1 -0.2 -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 +0.2 -0.4 -1.8 -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -0.2 -0.2 -0.3 -1.4 +0.4
phage P. simiae Grant Run MOI 10 -0.6 -0.5 -0.9 +0.4 -0.0
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.0 +0.3 -0.4 -0.7 +0.3
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.0 -1.2 -0.7 +0.2 +0.3
carbon source Carbon source D-Mannitol 10 mM +0.2 +0.3 -0.4 -1.7 +0.3
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 +0.3 +0.2 -1.1 -0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days +0.1 +0.2 -0.7 -0.8 +0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.0 +0.8 -0.8 -1.0 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 +0.4 -1.1 +0.6 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 +0.4 -0.0 -0.7 -0.5
stress R2A with Fusaric 120 ug/mL +0.4 -0.1 +0.5 -1.2 -0.0
phage P. simiae OR Antrim MOI 1 +0.5 +0.3 +0.4 -1.8 +0.5
seeds Growth on radish seeds for 72 hours -0.4 +0.1 +0.6 -0.9 +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.6 -0.0 +1.5 -1.5 -0.3
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.0 +0.4 +0.7 -0.8 +0.4
rhizosphere rhizosphere sample 8; outgrowth in LB -0.2 +0.5 +0.7 +0.8 -0.6
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.2 +0.6 +0.9 -0.7 +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 +0.0 +0.8 +1.2 -0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.9 +0.2 +0.6 +0.3 -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 -0.2 +0.4 +1.1 +0.3
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 +1.1 +0.3 +0.3 +0.4
stress methylglyoxal 0.032 vol% +0.8 +0.2 +0.6 +0.7 +0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +1.2 +0.4 +1.0 +0.5 -0.2
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