Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_18740	PS417_18745	PS417_18750	PS417_18755	PS417_18760
phage	P. simiae OR Antrim MOI 10	+0.1	N.D.	+0.6	-2.5	-1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.9	N.D.	+0.4	-2.7	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	N.D.	-0.2	-0.4	-2.7
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	-0.3	N.D.	-0.3	-0.8	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	N.D.	+0.3	-0.4	-1.7
phage	P. simiae ORA MOI 0.1	-0.0	N.D.	+0.2	-0.9	-1.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	+0.3	N.D.	+0.3	-0.9	-1.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	N.D.	+0.1	-1.1	+0.5
root	root sample 6; outgrowth in LB	-1.2	N.D.	-0.0	+0.6	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.6	N.D.	+1.0	-0.8	-0.4
soil	soil sample 3; outgrowth in LB	-0.6	N.D.	-0.0	+0.9	-1.1
seeds	Growth on radish seeds for 72 hours	-0.6	N.D.	-0.3	+0.7	-0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.0	N.D.	+0.5	+0.2	-1.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.7	N.D.	+0.2	-0.9	+0.9
phage	Wcs_1	-0.8	N.D.	-0.2	+0.8	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.5	N.D.	+0.3	-0.5	-0.8
agar plate interaction control	Taped volatile agar plate with no fungus	+0.1	N.D.	-0.5	-0.9	+1.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+1.2	N.D.	-0.1	-0.9	-0.4
carbon source	D-Galacturonic Acid (C)	+0.1	N.D.	+0.3	-1.0	+0.7
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.3	N.D.	+0.3	+1.0	-1.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	+0.7	N.D.	+0.4	-0.3	-0.7
carbon source	L-Valine (C)	+0.9	N.D.	-0.3	-0.8	+0.3
seeds	Growth on radish seeds for 72 hours	-0.7	N.D.	-0.5	+0.5	+1.1
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.3	N.D.	-0.3	+2.1	-0.9
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	-1.1	N.D.	+0.4	+1.3	+0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	N.D.	-0.5	+1.3	-0.4
phage	P. simiae OR1 MOI 0.1	-0.3	N.D.	+0.1	+1.8	-0.4
phage	JP1 MOI 10	+0.2	N.D.	+0.0	+1.5	-0.5
seeds	Growth on radish seeds for 24 hours	-0.7	N.D.	-0.1	+1.1	+1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	N.D.	+0.3	+0.2	+1.4