Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_18695 and PS417_18700 overlap by 4 nucleotidesPS417_18700 and PS417_18705 are separated by 104 nucleotidesPS417_18705 and PS417_18710 are separated by 60 nucleotidesPS417_18710 and PS417_18715 are separated by 14 nucleotides PS417_18695: PS417_18695 - hypothetical protein, at 4,059,446 to 4,059,655 _18695 PS417_18700: PS417_18700 - LysR family transcriptional regulator, at 4,059,652 to 4,060,527 _18700 PS417_18705: PS417_18705 - succinate dehydrogenase, at 4,060,632 to 4,062,014 _18705 PS417_18710: PS417_18710 - hypothetical protein, at 4,062,075 to 4,062,380 _18710 PS417_18715: PS417_18715 - peptidase M4, at 4,062,395 to 4,063,459 _18715
Group Condition PS417_18695 PS417_18700 PS417_18705 PS417_18710 PS417_18715
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.0 -2.2 -0.3 -1.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.3 -2.2 -0.3 -0.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.3 -1.7 -0.3 -1.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.1 -1.6 -0.6 -0.4
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -0.1 -0.2 -1.4 -0.4
soil soil sample 5; outgrowth in LB N.D. -0.1 -0.5 -1.5 +0.1
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X N.D. +0.2 -0.2 -1.6 -0.2
phage JP1 MOI 10 N.D. -0.1 -1.5 -0.1 -0.2
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. -0.1 -0.3 -1.4 +0.1
soil soil sample 7; outgrowth in LB N.D. +0.3 -0.3 -1.5 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. -0.2 +0.1 -0.8 -0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.2 -1.2 -0.1 -0.4
phage JP1 MOI 0.1 N.D. -0.4 -0.7 -0.7 +0.2
soil soil sample 6; outgrowth in LB N.D. -0.4 +0.2 -1.2 -0.0
phage P. simiae Grant Run MOI 0.1 N.D. +0.1 -1.1 -0.5 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. -0.3 +0.3 -0.7 -0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.3 -0.5 -0.8 -0.5
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. -0.4 -0.3 -1.1 +0.3
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X N.D. -0.2 +0.1 -1.4 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. -0.2 +0.2 -0.5 -0.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.4 -1.5 -0.1 -0.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. +0.3 -0.1 -1.5 +0.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. +0.4 -0.2 -1.1 -0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. +0.3 +0.2 -1.0 -0.3
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. +0.5 -0.4 -0.9 -0.1
seeds Growth on radish seeds for 72 hours N.D. -0.0 +0.2 -1.2 +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. -0.7 -0.1 +0.8 -0.3
root root sample 6; outgrowth in LB N.D. +0.1 -1.0 +1.3 -0.2
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x N.D. +0.1 +0.1 -0.6 +0.9
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x N.D. +0.1 +0.3 -0.7 +1.8
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