Fitness for 5 genes in Hydrogenophaga sp. GW460-11-11-14-LB1

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500 ntGFF3648 and GFF3649 are separated by 3 nucleotidesGFF3649 and GFF3650 are separated by 63 nucleotidesGFF3650 and GFF3651 are separated by 9 nucleotidesGFF3651 and GFF3652 are separated by 3 nucleotides GFF3648 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 533,200 to 536,487 GFF3648 GFF3649 - Inositol-1-monophosphatase (EC 3.1.3.25), at 536,491 to 537,375 GFF3649 GFF3650 - tRNA:Cm32/Um32 methyltransferase, at 537,439 to 538,254 GFF3650 GFF3651 - Serine acetyltransferase (EC 2.3.1.30), at 538,264 to 539,034 GFF3651 GFF3652 - FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8), at 539,038 to 539,514 GFF3652
Group Condition GFF3648 GFF3649 GFF3650 GFF3651 GFF3652
carbon source Ying_Nucleobase14 rep B; time point 1 -0.1 N.D. N.D. -1.4 +0.1
carbon source Ying_AminoAcid20 rep C; time point 3 +0.0 N.D. N.D. -0.8 -0.3
carbon source Ying_sugar7 rep B; time point 3 -0.1 N.D. N.D. -0.5 -0.4
carbon source Ying_OrganicAcid7 rep B; time point 3 +0.1 N.D. N.D. -0.3 -0.5
carbon source Ying_sugar7 rep B; time point 2 -0.1 N.D. N.D. -0.3 -0.3
carbon source Ying_Nucleobase14 rep B; time point 2 +0.0 N.D. N.D. -0.9 +0.3
carbon source Ying_OrganicAcid7 rep A; time point 3 -0.0 N.D. N.D. +0.2 -0.7
carbon source Ying_Nucleobase14 rep C; time point 2 -0.0 N.D. N.D. +0.2 -0.6
carbon source Ying_AminoAcid20 rep B; time point 3 -0.1 N.D. N.D. -0.5 +0.2
carbon source Ying_all64 rep B; time point 3 +0.0 N.D. N.D. -0.5 +0.2
carbon source Ying_AminoAcid20 rep B; time point 1 +0.0 N.D. N.D. -0.4 +0.1
carbon source Ying_Nucleobase14 rep C; time point 1 -0.0 N.D. N.D. +0.2 -0.4
carbon source Ying_OrganicAcid7 rep A; time point 1 +0.1 N.D. N.D. +0.4 -0.7
carbon source Ying_Nucleobase14 rep A; time point 1 -0.2 N.D. N.D. +0.4 -0.4
carbon source Ying_Others16 rep A; time point 1 +0.1 N.D. N.D. +0.4 -0.4
carbon source Ying_OrganicAcid7 rep C; time point 1 +0.1 N.D. N.D. +0.2 -0.3
carbon source Ying_sugar7 rep A; time point 3 +0.0 N.D. N.D. +0.3 -0.3
carbon source Ying_OrganicAcid7 rep B; time point 2 +0.0 N.D. N.D. -0.2 +0.3
carbon source Ying_all64 rep B; time point 2 +0.1 N.D. N.D. +0.3 -0.4
carbon source Ying_sugar7 rep A; time point 1 +0.0 N.D. N.D. -0.2 +0.4
carbon source Ying_sugar7 rep C; time point 2 -0.0 N.D. N.D. +0.7 -0.2
carbon source Ying_sugar7 rep A; time point 2 -0.0 N.D. N.D. +0.2 +0.3
carbon source Ying_Others16 rep C; time point 3 -0.0 N.D. N.D. +0.5 +0.2
carbon source Ying_Others16 rep B; time point 1 -0.1 N.D. N.D. +0.5 +0.3
carbon source Ying_sugar7 rep B; time point 1 +0.0 N.D. N.D. +0.6 +0.1
carbon source Ying_OrganicAcid7 rep B; time point 1 +0.1 N.D. N.D. +0.5 +0.2
carbon source Ying_all64 rep C; time point 2 -0.0 N.D. N.D. +0.9 -0.1
carbon source Ying_all64 rep C; time point 3 +0.3 N.D. N.D. +0.8 -0.1
carbon source Ying_all64 rep A; time point 1 +0.1 N.D. N.D. +0.7 +0.2
carbon source Ying_Others16 rep C; time point 2 -0.0 N.D. N.D. +0.8 +0.8
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