Fitness for 5 genes in Hydrogenophaga sp. GW460-11-11-14-LB1

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500 ntGFF3644 and GFF3645 overlap by 4 nucleotidesGFF3645 and GFF3646 are separated by 343 nucleotidesGFF3646 and GFF3647 are separated by 7 nucleotidesGFF3647 and GFF3648 are separated by 124 nucleotides GFF3644 - Ribonuclease BN (EC 3.1.-.-), at 528,146 to 529,000 GFF3644 GFF3645 - CBS domain protein, at 528,997 to 529,428 GFF3645 GFF3646 - RNA polymerase sigma-54 factor RpoN, at 529,772 to 531,196 GFF3646 GFF3647 - Chemotaxis protein methyltransferase CheR (EC 2.1.1.80), at 531,204 to 533,075 GFF3647 GFF3648 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 533,200 to 536,487 GFF3648
Group Condition GFF3644 GFF3645 GFF3646 GFF3647 GFF3648
carbon source Ying_sugar7 rep C; time point 2 -0.1 N.D. -0.2 -0.5 -0.0
carbon source Ying_sugar7 rep A; time point 3 -0.1 N.D. -0.1 -0.3 +0.0
carbon source Ying_AminoAcid20 rep C; time point 3 -0.2 N.D. -0.2 -0.1 +0.0
carbon source Ying_Others16 rep C; time point 1 -0.1 N.D. -0.2 -0.1 -0.1
carbon source Ying_Nucleobase14 rep C; time point 1 +0.3 N.D. -0.2 -0.5 -0.0
carbon source Ying_sugar7 rep A; time point 2 -0.2 N.D. -0.2 -0.1 -0.0
carbon source Ying_Nucleobase14 rep A; time point 1 -0.0 N.D. -0.1 -0.2 -0.2
carbon source Ying_all64 rep A; time point 1 -0.3 N.D. -0.2 -0.1 +0.1
carbon source Ying_AminoAcid20 rep A; time point 2 -0.1 N.D. -0.0 -0.3 -0.0
carbon source Ying_sugar7 rep B; time point 1 +0.0 N.D. -0.1 -0.3 +0.0
carbon source Ying_Nucleobase14 rep B; time point 2 -0.0 N.D. -0.1 -0.3 +0.0
carbon source Ying_all64 rep B; time point 1 +0.1 N.D. -0.1 -0.3 -0.0
carbon source Ying_Nucleobase14 rep A; time point 2 +0.1 N.D. -0.3 -0.2 -0.0
carbon source Ying_Others16 rep B; time point 2 +0.2 N.D. -0.2 -0.3 +0.0
carbon source Ying_OrganicAcid7 rep C; time point 2 -0.1 N.D. -0.1 -0.1 +0.0
carbon source Ying_sugar7 rep B; time point 2 +0.1 N.D. -0.1 -0.2 -0.1
carbon source Ying_Others16 rep A; time point 1 +0.0 N.D. -0.1 -0.2 +0.1
carbon source Ying_AminoAcid20 rep B; time point 2 -0.3 N.D. +0.0 +0.0 +0.0
carbon source Ying_OrganicAcid7 rep B; time point 3 -0.0 N.D. -0.2 -0.0 +0.1
carbon source Ying_all64 rep C; time point 2 +0.1 N.D. -0.1 -0.1 -0.0
carbon source Ying_sugar7 rep C; time point 1 +0.1 N.D. -0.1 -0.2 +0.0
carbon source Ying_AminoAcid20 rep A; time point 1 +0.1 N.D. -0.1 -0.1 +0.1
carbon source Ying_sugar7 rep A; time point 1 +0.3 N.D. -0.2 -0.2 +0.0
carbon source Ying_all64 rep C; time point 3 -0.1 N.D. -0.1 -0.0 +0.3
carbon source Ying_Others16 rep B; time point 3 +0.2 N.D. -0.0 -0.1 -0.1
carbon source Ying_Others16 rep C; time point 3 +0.3 N.D. -0.0 -0.0 -0.0
carbon source Ying_sugar7 rep C; time point 3 +0.2 N.D. +0.0 -0.1 +0.1
carbon source Ying_AminoAcid20 rep C; time point 2 +0.2 N.D. -0.1 +0.0 +0.1
carbon source Ying_OrganicAcid7 rep A; time point 1 +0.3 N.D. +0.1 -0.1 +0.1
carbon source Ying_OrganicAcid7 rep A; time point 3 +0.2 N.D. +0.2 +0.1 -0.0
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