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Cofit
Protein
Homologs
Fitness for 5 genes in
Sphingobium sp. HT1-2
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Top 18 experiments (either direction), sorted by average fitness
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500 nt
GFF3633 and GFF3634 are separated by 141 nucleotides
GFF3634 and GFF3635 are separated by 4 nucleotides
GFF3635 and GFF3636 are separated by 4 nucleotides
GFF3636 and GFF3637 are separated by 1 nucleotides
GFF3633 - Transcriptional regulator, LysR family, at 3,681,626 to 3,682,462
GFF3633
GFF3634 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 3,682,604 to 3,683,548
GFF3634
GFF3635 - Acyl-CoA dehydrogenase, at 3,683,553 to 3,684,728
GFF3635
GFF3636 - ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 3,684,733 to 3,685,707
GFF3636
GFF3637 - hypothetical protein, at 3,685,709 to 3,685,852
GFF3637
Group
Condition
GFF3633
GFF3634
GFF3635
GFF3636
GFF3637
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.3
-0.2
-0.0
-0.8
+0.3
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.1
-0.0
+0.0
-0.0
+0.0
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.1
-0.0
+0.1
-0.1
-0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.1
-0.0
+0.1
+0.0
-0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.5
+0.1
+0.2
+0.0
+0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.2
-0.1
-0.0
+0.3
+0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.2
-0.1
+0.1
+0.0
+0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.2
-0.2
+0.2
+0.1
+0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.0
+0.1
-0.1
+0.1
-0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.2
-0.1
+0.1
+0.0
+0.2
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.1
+0.1
+0.1
+0.1
-0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.0
+0.0
+0.1
+0.1
-0.0
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.1
-0.0
+0.2
+0.1
-0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.1
+0.0
-0.0
+0.0
+0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.1
-0.0
+0.1
-0.1
+0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.1
+0.1
-0.0
+0.1
+0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.2
-0.3
-0.1
+0.5
+0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.0
+0.1
+0.1
+0.2
+0.3
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