Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 552 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_18475	PS417_18480	PS417_18485	PS417_18490	PS417_18495
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.5	-0.2	-0.5	-0.6	-1.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.9	-0.7	-0.3	-0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.7	-0.2	-0.2	-0.8	-0.7
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.6	-0.4	-0.4	+0.2	-0.7
phage	JP1 MOI 10	-1.0	+0.3	+0.2	-0.8	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	+0.0	+0.7	-0.7	-1.2
phage moi 100	Time6-phageFRS	+0.6	-0.1	-0.1	-1.0	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	+0.2	-0.1	-0.8	-0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	+0.1	+0.7	-0.4	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.5	-0.0	-0.4	+0.8	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.6	-0.3	-0.6	+0.4	+0.7
soil	soil sample 3; outgrowth in LB	+0.4	+0.2	+0.2	-0.6	-0.8
phage	P. simiae OR1 MOI 0.1	+0.7	+0.2	-0.1	-1.0	-0.3
phage	JP1 MOI 10	+0.2	+0.3	+0.8	-0.7	-0.9
carbon source	L-Valine (C)	+0.1	-0.7	-1.1	+1.0	+0.5
stress	methylglyoxal 0.032 vol%	-0.3	-0.7	+0.4	+0.8	-0.4
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.0	+0.3	+0.1	+0.7	-1.1
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.0	+0.3	+0.2	+0.9	-1.0
phage	Wcs_0.1	+0.5	+0.2	+0.3	-0.8	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	-0.1	-0.1	+0.4	+1.1
carbon source	L-Valine (C)	+0.5	-0.5	-0.8	+1.2	+0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.1	+0.2	+0.3	+1.0	-0.7
phage	Wcs_1	+0.4	+0.4	+0.3	-0.5	+0.8
seeds	Growth on radish seeds for 72 hours	-0.6	+0.2	-0.3	+0.8	+1.4
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	-0.3	+0.5	+0.6	+0.6	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-0.1	-0.3	+1.2	+0.9
soil	soil sample 5; outgrowth in LB	-0.2	+0.3	+1.0	+0.3	+0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.1	+0.1	-0.5	+0.5	+2.0
root	root sample 6; outgrowth in LB	+0.7	+0.6	+0.7	+0.1	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.9	-0.1	-0.1	+0.8	+0.9