Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_18465	PS417_18470	PS417_18475	PS417_18480	PS417_18485
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.2	-0.7	-0.7	-0.2	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.3	-0.2	-0.6	-0.3	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.1	-1.0	-0.4	-0.4	-0.3
carbon source	L-Valine (C)	+0.0	+0.1	+0.1	-0.7	-1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	+0.2	-0.3	-0.9	-0.7
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.9	-0.7	-0.4	+0.0	+0.5
stress	Doxycycline hyclate 0.001 mg/ml	-0.1	+0.3	-1.2	+0.0	-0.5
nophagecontrol	Only library	+0.3	-0.7	-0.6	+0.1	-0.1
phage	JP1 MOI 1	+0.4	-0.8	-0.8	+0.0	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.2	+0.5	-0.5	-0.2	-0.5
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.0	+0.5	-0.5	-0.4	-0.4
phage	P. simiae Grant Run MOI 10	+0.3	-0.6	+0.1	+0.2	-0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.2	-0.6	-0.7	-0.3	+0.7
phage	JP1 MOI 10	+0.5	-0.5	-1.0	+0.3	+0.2
stress	methylglyoxal 0.032 vol%	-0.2	+0.8	-0.3	-0.7	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	-0.9	+1.3	-0.1	-0.2
phage	JP1 MOI 10	-0.6	-0.2	+0.2	+0.3	+0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-0.6	+0.7	-0.0	+0.4
carbon source	L-Valine (C)	+0.4	+0.9	+0.5	-0.5	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.4	-0.1	+0.1	-0.1	+1.2
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	+0.2	-0.2	-0.3	+0.5	+0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7	+0.8	+0.9	-0.1	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.3	+1.1	-0.1	+0.1	-0.5
carbon source	D-Xylose (C)	-0.5	+0.4	+0.7	+0.2	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+0.5	-0.5	+0.1	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.2	+0.5	+0.9	+0.4	-0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.1	+2.5	-0.3	-0.2	+0.0
phage	Wcs_1	+0.3	+0.5	+0.4	+0.4	+0.3
root	root sample 6; outgrowth in LB	+0.1	+0.1	+0.7	+0.6	+0.7
soil	soil sample 6; outgrowth in LB	+0.2	+0.5	+0.5	+0.2	+0.8