Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_18455	PS417_18460	PS417_18465	PS417_18470	PS417_18475
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-1.0	-0.3	-0.2	-0.7	-0.7
phage	P. simiae Grant Run MOI 0.1	-1.1	-0.7	-0.1	-0.2	-0.6
phage	JP1 MOI 10	-1.1	-0.5	-0.6	-0.2	+0.2
phage	JP1 MOI 10	-0.4	-0.7	+0.5	-0.5	-1.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-1.7	-0.4	-0.0	+0.4	-0.2
phage	P. simiae OR Antrim MOI 10	-1.2	-0.3	+0.3	-0.6	-0.1
soil	soil sample 2; outgrowth in LB	-1.4	-0.1	+0.3	-0.6	-0.1
phage	P. simiae Grant Run MOI 10	-0.4	-1.2	+0.3	-0.4	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.3	+0.9	-0.2	-0.5	-0.4
rhizosphere	rhizosphere sample 2; outgrowth in LB	-3.1	+0.1	+0.4	+0.4	+0.6
nophagecontrol	Only library	-1.2	+0.7	+0.3	-0.7	-0.6
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	+0.4	-0.9	-0.7	-0.4
phage moi 100	Time6-phageFRS	-0.8	-0.1	+0.3	-0.7	+0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.1	+0.6	-0.6	-0.1	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.8	+1.1	+0.1	+0.2	-0.3
root	root sample 6; outgrowth in LB	-0.8	-0.8	+0.1	+0.1	+0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.8	-0.5	-0.4	+1.0	+0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.0	-0.5	-0.3	+0.8	+0.3
phage	JP1 MOI 1	+0.2	+0.5	+0.4	-0.8	-0.8
ecofab	LB 0.5x in EcoFAB_3.5mL	+0.8	+0.3	-0.2	-0.5	-0.6
seeds	Growth on radish seeds for 72 hours	+0.8	-1.2	+0.5	-0.1	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	-0.2	-0.7	+0.8	+0.9
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	+0.9	-0.1	-0.9	+1.3
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.6	+1.2	+0.3	-0.5	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.6	+0.5	-0.2	+0.5	+0.9
carbon source	L-Valine (C)	-0.7	+0.1	+0.4	+0.9	+0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+1.7	-0.3	-0.0	+0.3	-0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+1.3	-0.3	+0.2	+0.5	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.0	+0.7	+0.1	-0.6	+0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.0	+0.1	-0.1	+2.5	-0.3