Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_18440	PS417_18445	PS417_18450	PS417_18455	PS417_18460
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.5	-0.3	-1.0	-1.7	-0.4
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.2	-0.0	-0.2	-3.1	+0.1
carbon source	2'-Deoxyinosine 5 mM (C)	-0.5	-1.3	-0.6	-0.4	-0.4
root	root sample 6; outgrowth in LB	-0.7	-0.3	-0.1	-0.8	-0.8
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.7	+0.1	-0.8	-1.1	-0.1
stress	methylglyoxal 0.032 vol%	-0.7	-1.6	-0.3	+0.5	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-0.8	-0.5	-1.8	+1.1
phage	P. simiae Grant Run MOI 0.1	+0.0	+0.5	-0.5	-1.1	-0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.6	+0.6	-0.3	-1.0	-0.3
seeds	Growth on radish seeds for 72 hours	-0.2	-0.9	+0.9	-0.8	-0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	+0.5	-0.4	-1.0	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	+0.6	-0.8	-1.3	+0.9
soil	soil sample 2; outgrowth in LB	-0.6	+0.6	+0.5	-1.4	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.4	-0.8	+1.1	-0.1	-0.8
phage	JP1 MOI 10	-0.2	+0.6	+0.3	-1.1	-0.5
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.5	-0.1	-0.5	-0.6	+1.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	-0.5	+0.3	-1.1	+0.6
seeds	Growth on radish seeds for 72 hours	-0.4	+0.6	+0.5	+0.8	-1.2
solid stress	Fraxetin 3 mM; solid stress	-0.0	+0.4	+1.0	-0.3	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.7	-0.4	-0.8	+1.0	+0.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.5	-0.3	-0.6	+1.3	-0.3
seeds	Growth on radish seeds for 72 hours	-1.0	+0.8	+1.5	+0.1	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+1.2	+0.8	-1.0	-0.1
phage	Wcs_0.1	+0.3	+1.2	+0.5	-1.1	-0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.0	+1.4	-0.1	-0.8	-0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.1	+0.3	-0.3	+1.7	-0.3
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4	+2.0	+0.4	-0.5	+0.2
stress	1-ethyl-3-methylimidazolium chloride 200 mM	+0.6	+1.2	+0.8	+0.0	+0.2
phage	Wcs_1	+0.5	+1.0	+0.8	+0.6	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.9	+0.2	+0.8	+0.8	+0.9