Fitness for 5 genes in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

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500 ntGFF3602 and GFF3603 are separated by 57 nucleotidesGFF3603 and GFF3604 overlap by 16 nucleotidesGFF3604 and GFF3605 overlap by 11 nucleotidesGFF3605 and GFF3606 are separated by 11 nucleotides GFF3602 - Type III secretion cytoplasmic protein (YscL), at 354,306 to 355,298 GFF3602 GFF3603 - Secretion system apparatus protein SsaM, at 355,356 to 355,724 GFF3603 GFF3604 - Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV), at 355,709 to 357,754 GFF3604 GFF3605 - Type III secretion cytoplasmic ATP synthase (EC 3.6.3.14, YscN,SpaL,MxiB,HrcN,EscN), at 357,744 to 359,045 GFF3605 GFF3606 - Type III secretion spans bacterial envelope protein (YscO), at 359,057 to 359,425 GFF3606
Group Condition GFF3602 GFF3603 GFF3604 GFF3605 GFF3606
phage phi19h1_phage 15 MOI -0.3 -2.0 -0.5 -0.3 N.D.
phage LB_plus_SM_buffer with FelixO1_phage (wt_new) 2 MOI -0.3 -1.4 -0.2 -0.3 N.D.
phage LB_plus_SM_buffer with 8C2_phage 15 MOI -0.2 -1.3 -0.3 -0.3 N.D.
phage LB_plus_SM_buffer with 6D2_phage 15 MOI -0.1 -1.4 -0.2 -0.3 N.D.
phage Br60_phage 15 MOI -0.8 -0.5 -0.4 -0.2 N.D.
phage LB_plus_SM_buffer with FelixO1_phage (wt_new) 2 MOI -0.4 -1.3 +0.1 -0.2 N.D.
phage LB_plus_SM_buffer with 6C2_phage 15 MOI -0.1 -1.4 -0.0 -0.2 N.D.
phage LB_plus_SM_buffer with 8C2_phage 15 MOI -0.3 -1.2 -0.1 -0.0 N.D.
phage LB_plus_SM_buffer with 6D2_phage 15 MOI +0.2 -1.7 -0.1 -0.1 N.D.
phage LB_plus_SM_buffer with 6C2_phage 15 MOI -0.5 -0.6 -0.1 -0.3 N.D.
phage LB_plus_SM_buffer with 6F2_phage 15 MOI -0.4 -0.7 -0.1 -0.2 N.D.
phage LB_plus_SM_buffer with 6F2_phage 15 MOI -0.0 -1.0 -0.1 -0.2 N.D.
phage LB_plus_SM_buffer with ES18h1_phage 0.75 MOI -0.2 -1.2 +0.1 +0.0 N.D.
phage LB_plus_SM_buffer with 6D2_phage 15 MOI -0.1 -0.9 -0.2 -0.1 N.D.
phage LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI -0.1 -0.6 -0.1 -0.4 N.D.
phage LB_plus_SM_buffer with phi19h1_phage 15 MOI -0.2 -0.7 -0.1 -0.2 N.D.
nophagecontrol No phage control -0.4 -0.6 -0.1 -0.0 N.D.
phage LB_plus_SM_buffer with FelixO1_phage (old) 15 MOI +0.2 -1.1 +0.1 -0.4 N.D.
phage LB_plus_SM_buffer with FelixO1_phage (old) 15 MOI +0.0 -0.7 -0.1 -0.3 N.D.
phage LB_plus_SM_buffer with Ffm_phage 15 MOI -0.4 -0.6 +0.1 -0.1 N.D.
phage Br60_phage 15 MOI -0.9 +0.2 -0.0 -0.2 N.D.
phage LB_plus_SM_buffer with S16_phage 15 MOI -0.5 -0.6 +0.4 +0.0 N.D.
phage LB_plus_SM_buffer with 6D2_phage 0.75 MOI -0.1 -0.9 +0.1 +0.2 N.D.
phage LB_plus_SM_buffer with P22_phage 15 MOI -0.5 -0.9 +0.8 -0.2 N.D.
nophagecontrol No phage control -0.5 +0.3 -0.1 -0.2 N.D.
phage LB_plus_SM_buffer with 6F2_phage 15 MOI -0.3 -0.7 +0.2 +0.3 N.D.
phage LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI +0.6 -0.5 -0.1 -0.3 N.D.
phage 6H2_phage 10 MOI; agar plate assay -0.5 +0.6 -0.0 -0.4 N.D.
phage LB_plus_SM_buffer with Br60_phage 0.0005 MOI +0.0 +0.4 -0.3 +0.5 N.D.
phage LB_plus_SM_buffer with FelixO1_phage 0.05 MOI -0.1 +0.6 +0.2 +0.2 N.D.
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