Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_18420	PS417_18425	PS417_18430	PS417_18435	PS417_18440
stress	methylglyoxal 0.032 vol%	-1.9	-5.0	N.D.	-3.1	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.9	-3.6	N.D.	-1.2	-0.4
root	root sample 6; outgrowth in LB	-0.5	-0.8	N.D.	-2.2	-0.7
carbon source	2'-Deoxyinosine 5 mM (C)	-1.2	-1.3	N.D.	-1.8	+0.3
seeds	Growth on radish seeds for 72 hours	-0.7	-0.7	N.D.	-1.2	-1.0
nitrogen source	Uridine (N)	-0.8	-1.1	N.D.	-1.0	-0.6
stress	Gentamicin 0.008 mg/ml	-0.1	-0.9	N.D.	-1.5	-0.9
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.2	-1.1	N.D.	-1.5	-0.6
nitrogen source	Cytosine (N)	-1.3	-0.7	N.D.	-0.8	-0.4
carbon source	Gly-Glu (C)	-0.8	-0.9	N.D.	-1.0	-0.5
solid stress	Scopoletin 3 mM; solid stress	-0.7	-1.5	N.D.	-0.6	-0.3
nitrogen source	Cytidine (N)	-0.7	-1.3	N.D.	-0.5	-0.6
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.6	-2.2	N.D.	+0.1	-0.2
nitrogen source	Inosine (N)	-0.5	-0.9	N.D.	-0.8	-0.6
stress	Doxycycline hyclate 0.001 mg/ml	-0.2	-1.5	N.D.	-0.2	-1.0
agar plate interaction control	Taped volatile agar plate with no fungus	-0.8	-1.2	N.D.	-0.6	-0.2
soil	soil sample 6; outgrowth in LB	-0.5	-1.4	N.D.	-0.6	-0.2
stress	Nalidixic 0.025 mg/ml	-0.8	-1.3	N.D.	-0.7	+0.1
carbon source	D-Alanine (C)	-0.4	-1.0	N.D.	-0.8	-0.5
rhizosphere	rhizosphere sample 8; outgrowth in LB	-1.0	-1.6	N.D.	+0.1	-0.0
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.6	-1.3	N.D.	+0.2	-0.7
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+2.3	-0.8	N.D.	-0.4	-0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.8	-1.4	N.D.	+0.1	+1.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+2.4	-0.3	N.D.	-0.8	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+2.0	N.D.	-0.8	+0.9
phage	P. simiae OR Antrim MOI 10	-0.2	+1.4	N.D.	+0.9	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.9	+0.7	N.D.	+0.9	+0.3
stress	1-ethyl-3-methylimidazolium chloride 200 mM	+0.8	+0.6	N.D.	+1.0	+0.6
phage	Wcs_0.1	+0.0	+2.5	N.D.	+0.6	+0.3
phage	Wcs_1	+1.1	+2.9	N.D.	+0.8	+0.5