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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF3596 and GFF3597 overlap by 4 nucleotides
GFF3597 and GFF3598 are separated by 92 nucleotides
GFF3598 and GFF3599 are separated by 177 nucleotides
GFF3599 and GFF3600 are separated by 90 nucleotides
GFF3596 - TRAP-type C4-dicarboxylate transport system, large permease component, at 108,933 to 110,819
GFF3596
GFF3597 - TRAP-type C4-dicarboxylate transport system, small permease component, at 110,816 to 111,445
GFF3597
GFF3598 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 111,538 to 112,653
GFF3598
GFF3599 - Rhodanese-related sulfurtransferase, at 112,831 to 113,241
GFF3599
GFF3600 - Pantothenate kinase type III, CoaX-like (EC 2.7.1.33), at 113,332 to 114,111
GFF3600
Group
Condition
GFF3596
GFF3597
GFF3598
GFF3599
GFF3600
complex community
Community=Locust bean gum; Passage=4
-0.2
-0.2
-0.4
-0.2
-3.3
complex community
Community=guar; Passage=4
-0.1
-0.1
-0.3
-0.3
-3.3
complex community
Community=guar; Passage=4
-0.2
+0.2
-0.1
-0.2
-3.5
complex community
Community=guar; Passage=4
+0.1
-0.2
+0.1
-0.2
-3.6
complex community
Community=Locust bean gum; Passage=4
+0.0
-0.1
-0.2
-0.1
-3.3
complex community
Community=Kojac gum; Passage=4
-0.2
+0.1
-0.2
-0.2
-3.2
complex community
Community=arabino-guar; Passage=4
-0.2
+0.2
+0.0
-0.1
-3.6
complex community
Community=Locust bean gum; Passage=4
+0.1
-0.1
+0.1
-0.6
-3.0
complex community
Community=arabino-guar; Passage=4
+0.0
-0.2
+0.1
-0.1
-3.4
complex community
Community=arabino-guar; Passage=4
-0.0
-0.1
+0.1
-0.1
-3.3
complex community
Community=arabino-guar; Passage=4
+0.2
+0.0
+0.2
-0.3
-3.4
complex community
Community=guar; Passage=4
+0.2
+0.0
+0.1
-0.2
-3.3
complex community
Community=Locust bean gum; Passage=4
+0.5
-0.4
-0.2
+0.2
-3.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.0
-0.0
+0.1
+0.2
-2.6
vitamin
M9 with Supernatant from Cyptococcus
+0.1
+0.0
+0.2
+0.0
-2.6
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.2
+0.0
+0.1
+0.3
-2.7
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.3
+0.0
-0.1
+0.2
-2.6
vitamin
M9 with Supernatant from Cyptococcus
+0.2
+0.1
-0.1
+0.1
-2.4
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.1
+0.1
+0.1
+0.2
-2.5
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.1
+0.1
-0.1
+0.3
-2.5
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.2
+0.2
+0.1
+0.2
-2.7
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.1
+0.1
+0.1
+0.4
-2.6
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.1
+0.1
+0.0
+0.4
-2.6
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.1
+0.1
-0.1
+0.4
-2.5
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.2
-0.0
+0.0
+0.3
-2.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.1
+0.2
+0.0
+0.3
-2.4
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.2
+0.0
+0.1
+0.3
-2.4
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.1
+0.2
+0.1
+0.2
-2.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.1
+0.2
+0.2
+0.3
-2.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.2
+0.0
+0.1
+0.6
-2.2
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