Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_18390 and PS417_18395 are separated by 3 nucleotidesPS417_18395 and PS417_18400 overlap by 4 nucleotidesPS417_18400 and PS417_18405 are separated by 57 nucleotidesPS417_18405 and PS417_18410 are separated by 553 nucleotides PS417_18390: PS417_18390 - LacI family transcriptional regulator, at 4,003,113 to 4,004,135 _18390 PS417_18395: PS417_18395 - D-ribose ABC transporter, permease component RbsC (from data), at 4,004,139 to 4,005,116 _18395 PS417_18400: PS417_18400 - D-ribose ABC transporter, ATPase component RbsA (from data), at 4,005,113 to 4,006,666 _18400 PS417_18405: PS417_18405 - D-ribose ABC transporter, substrate-binding component RbsB (from data), at 4,006,724 to 4,007,680 _18405 PS417_18410: PS417_18410 - glutaminase, at 4,008,234 to 4,009,322 _18410
Group Condition PS417_18390 PS417_18395 PS417_18400 PS417_18405 PS417_18410
carbon source Cytidine (C) -2.2 -3.9 -4.8 N.D. +0.2
carbon source Uridine (C) -2.1 -4.2 -4.1 N.D. +0.1
carbon source Uridine (C) -1.9 -4.1 -3.2 N.D. +0.1
carbon source Inosine (C) -1.9 -3.2 -3.6 N.D. +0.1
carbon source D-Ribose (C) -1.6 -4.0 -3.3 N.D. +0.3
carbon source Cytidine (C) -1.9 -2.6 -3.5 N.D. +0.1
carbon source Inosine (C) -1.5 -2.8 -2.8 N.D. -0.2
carbon source D-Ribose (C) -1.7 -3.2 -2.7 N.D. +0.5
root root sample 6; outgrowth in LB -3.6 -0.4 -1.3 N.D. -0.2
rhizosphere rhizosphere sample 1; outgrowth in LB -3.1 -0.0 -1.0 N.D. -0.6
soil soil sample 4; outgrowth in LB -3.6 -0.1 +0.6 N.D. -0.2
soil soil sample 5; outgrowth in LB -3.8 +1.0 -0.6 N.D. +0.1
stress methylglyoxal 0.032 vol% -0.6 -0.5 -0.4 N.D. -1.7
rhizosphere rhizosphere sample 8; outgrowth in LB -2.5 +0.3 -0.3 N.D. -0.5
soil soil sample 6; outgrowth in LB -2.7 +0.2 -0.0 N.D. -0.4
soil soil sample 7; outgrowth in LB -1.9 -0.7 +0.4 N.D. -0.5
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.0 -0.6 -1.1 N.D. +1.0
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -2.0 -0.5 +0.5 N.D. +0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.7 +0.4 +1.4 N.D. -0.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +1.2 -1.1 +0.7 N.D. +0.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +1.4 -0.3 +1.2 N.D. -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +1.0 +0.8 +1.3 N.D. -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +1.8 -0.1 +1.4 N.D. +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +1.5 +0.4 +2.0 N.D. -0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.7 +1.0 +1.7 N.D. +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +1.2 +0.4 +2.0 N.D. +0.3
carbon source Gly-Glu (C) +3.8 +1.0 +3.2 N.D. -1.0
carbon source Gly-Glu (C) +4.3 +0.7 +3.4 N.D. -1.1
carbon source 2'-Deoxyinosine 5 mM (C) +5.3 +0.4 +3.5 N.D. -0.2
carbon source 2'-Deoxyinosine 5 mM (C) +5.4 +1.6 +3.5 N.D. -0.0
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