Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 552 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_18355	PS417_18360	PS417_18365	PS417_18370	PS417_18375
solid stress	Fraxetin 3 mM; solid stress	-1.9	-2.0	-0.4	+0.3	+0.0
stress	Nalidixic 0.025 mg/ml	-1.9	-0.8	-0.9	-0.4	-0.0
liquid stress	Fraxetin 3 mM; liquid stress	-1.6	-0.1	-0.0	-1.8	-0.0
stress	Doxycycline hyclate 0.001 mg/ml	-1.9	-0.5	-0.7	+0.1	+0.1
stress	Nalidixic 0.015 mg/ml	-1.3	-0.4	-0.8	+0.7	-0.1
stress	2-Furfuraldehyde 0.03 vol%	-1.9	+0.1	-0.2	+0.7	-0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.9	-0.9	+0.4	+0.9	-0.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.7	-0.8	+0.3	+1.4	-0.1
phage	JP1 MOI 1	+1.3	+0.2	+0.3	-1.7	+0.1
stress	Phosphomycin 0.002 mg/ml	-0.7	+1.8	-0.2	-0.5	-0.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	-0.9	+0.2	+1.7	-0.0
phage	P. simiae OR Antrim MOI 0.1	+1.6	-0.6	+0.3	+0.7	-0.0
phage	P. simiae OR1 MOI 0.1	+2.3	+0.5	+0.6	-0.8	-0.4
agar plate interaction control	Taped volatile agar plate with no fungus	+0.1	+0.3	-0.6	+2.1	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+2.1	+1.5	-0.1	-1.1	+0.1
motility	outer cut, LB soft agar motility assay	+1.6	+1.2	-0.3	+0.1	-0.1
phage	P. simiae OR Antrim MOI 10	+1.9	+0.3	+0.2	+0.6	-0.3
stress	methylglyoxal 0.032 vol%	+1.9	+1.2	+0.3	-0.6	-0.0
nophagecontrol	Only library	+0.8	+1.1	+0.7	+0.4	-0.2
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+2.8	-0.2	+0.1	-0.0	+0.2
carbon source	Gly-Glu (C)	+3.3	+0.1	-0.1	-0.0	-0.0
phage	JP1 MOI 1	+1.5	+0.4	+0.3	+0.9	+0.1
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+2.4	+1.0	+0.1	+0.0	+0.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	+2.3	-0.0	+0.6	+0.3
phage	Wcs_1	+1.4	+1.3	+0.3	-0.3	+1.0
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+3.0	+0.5	+0.0	+0.2	+0.0
carbon source	Gly-Glu (C)	+3.5	+0.5	+0.2	-0.3	-0.0
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+2.4	+1.0	+0.0	+0.2	+0.4
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+2.3	+0.5	+0.1	+1.4	+0.7
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+4.7	+0.3	+0.6	-0.0	+0.2