Fitness for 5 genes in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

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500 ntGFF3580 and GFF3581 are separated by 178 nucleotidesGFF3581 and GFF3582 are separated by 30 nucleotidesGFF3582 and GFF3583 are separated by 418 nucleotidesGFF3583 and GFF3584 are separated by 1 nucleotides GFF3580 - Transcriptional regulator, MerR family, associated with photolyase, at 337,313 to 338,041 GFF3580 GFF3581 - Secretion system regulator of DegU/UvrY/BvgA type, at 338,220 to 338,858 GFF3581 GFF3582 - Secretion system regulator: Sensor component (EC 2.7.3.-) (EC 2.7.1.40), at 338,889 to 341,651 GFF3582 GFF3583 - Type III secretion protein SsaB, at 342,070 to 342,453 GFF3583 GFF3584 - Type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG), at 342,455 to 343,948 GFF3584
Group Condition GFF3580 GFF3581 GFF3582 GFF3583 GFF3584
phage phi19h1_phage 15 MOI +0.1 -0.3 -0.5 -0.7 -0.9
phage LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI -0.8 -0.1 -0.1 -0.5 -0.3
phage LB_plus_SM_buffer with FelixO1_phage (wt_new) 2 MOI -0.5 -0.7 +0.3 -0.5 -0.4
phage Br60_phage 15 MOI -0.1 -0.5 -0.3 -0.6 -0.2
phage phi19h1_phage 15 MOI +0.0 -0.2 -0.4 -0.4 -0.6
phage LB_plus_SM_buffer with phi19h1_phage 15 MOI -0.3 +0.2 -0.2 -0.4 -0.7
phage Ffm_phage 10 MOI; agar plate assay +0.1 -0.2 -1.3 +0.3 -0.2
phage LB_plus_SM_buffer with Ffm_phage 0.001875 MOI -0.0 -0.1 -0.3 -0.7 -0.3
phage LB_plus_SM_buffer with EIP30_phage 0.0000875 MOI -0.4 +0.2 -0.5 -0.6 +0.0
phage Br60_phage 15 MOI -0.6 +0.2 -0.1 -0.4 +0.1
phage LB_plus_SM_buffer with phi19h1_phage 0.001875 MOI -0.3 +0.1 +0.1 -0.9 +0.1
phage 6F2_phage 15 MOI +0.1 +0.2 -0.1 +0.3 -1.2
nophagecontrol No phage control -0.0 -0.2 -0.3 -0.3 +0.5
lb_plus_sm_buffer LB_plus_SM_buffer +0.3 -0.2 -0.4 +0.4 -0.1
phage Br60_phage 15 MOI +0.1 -0.4 +0.4 +0.3 -0.4
phage 6H2_phage 10 MOI; agar plate assay +0.4 +0.3 +0.1 -0.7 -0.0
phage 6F2_phage 15 MOI -0.1 +0.2 +0.3 +0.3 -0.5
phage LB_plus_SM_buffer with Br60_phage 0.0005 MOI -0.1 +0.2 +0.2 -0.9 +0.7
micoeukaryotes C.elegans, mixed culture-1 -0.3 +0.3 +0.2 -0.2 +0.3
phage LB_plus_SM_buffer with 6C2_phage 0.25 MOI +0.6 -0.3 -0.3 +0.4 -0.1
phage LB_plus_SM_buffer with FelixO1_phage 0.5 MOI +0.5 +0.0 -0.1 -0.5 +0.5
micoeukaryotes Acanthamoeba sp., muxed culture-2 +0.2 +0.2 +0.3 -0.5 +0.3
micoeukaryotes Dictyostellum sp.mixed culture-2 +0.4 +0.2 +0.3 -0.4 -0.0
phage LB_plus_SM_buffer with EIP16_phage 0.0875 MOI +0.3 +0.5 +0.2 -0.4 -0.1
phage LB_plus_SM_buffer with EIP16_phage 8.75 MOI -0.1 +0.5 +0.2 +0.3 -0.3
micoeukaryotes Dictyostellum sp.mixed culture-1 +0.3 +0.4 +0.2 -0.4 +0.4
micoeukaryotes Acanthamoeba sp., muxed culture-1 +0.3 +0.4 -0.2 +0.4 +0.1
phage LB_plus_SM_buffer with ES18h1_phage 0.00075 MOI +0.3 +0.4 +0.3 +0.2 +0.2
phage LB_plus_SM_buffer with FelixO1_phage (wt new) 0.75 MOI +0.1 +0.3 +0.6 +0.4 +0.2
phage LB_plus_SM_buffer with ES18h1_phage 0.75 MOI +0.2 +0.1 -0.5 +1.1 +1.3
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