Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF3579 and GFF3580 overlap by 43 nucleotidesGFF3580 and GFF3581 are separated by 82 nucleotidesGFF3581 and GFF3582 are separated by 31 nucleotidesGFF3582 and GFF3583 are separated by 107 nucleotides GFF3579 - probable iron-sulfur binding protein YPO1417, at 90,214 to 91,203 GFF3579 GFF3580 - COG2124: Cytochrome P450, at 91,161 to 92,330 GFF3580 GFF3581 - Transcriptional regulator, ArsR family, at 92,413 to 93,105 GFF3581 GFF3582 - Tripartite tricarboxylate transporter TctC family, at 93,137 to 94,147 GFF3582 GFF3583 - AMP nucleosidase (EC 3.2.2.4), at 94,255 to 95,772 GFF3583
Group Condition GFF3579 GFF3580 GFF3581 GFF3582 GFF3583
complex community Community=arabino-guar; Passage=4 -1.2 N.D. -1.9 +0.3 -5.9
complex community Community=guar; Passage=4 +0.0 N.D. -1.0 -0.1 -5.8
complex community Community=Locust bean gum; Passage=4 -0.5 N.D. -0.4 +0.3 -5.6
complex community Community=guar; Passage=4 +0.1 N.D. -0.7 +0.5 -5.7
complex community Community=Locust bean gum; Passage=4 -0.9 N.D. -0.8 +0.3 -4.5
complex community Community=guar; Passage=4 +0.0 N.D. -0.1 +0.1 -5.3
complex community Community=arabino-guar; Passage=4 -0.2 N.D. -0.1 +0.2 -5.0
complex community Community=arabino-guar; Passage=4 -1.0 N.D. +0.3 +0.5 -4.8
complex community Community=arabino-guar; Passage=4 -0.8 N.D. +0.5 +0.1 -4.8
complex community Community=Locust bean gum; Passage=4 +0.1 N.D. +0.3 +0.8 -5.7
complex community Community=guar; Passage=4 +0.1 N.D. +1.0 +0.2 -5.7
complex community Community=Locust bean gum; Passage=4 -0.2 N.D. +0.5 +0.7 -4.7
complex community Community=Kojac gum; Passage=4 -0.9 N.D. -1.5 +0.8 -1.8
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.3 N.D. -0.5 -0.2 -0.4
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL -0.2 N.D. -0.5 -0.0 -0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.1 N.D. -0.4 -0.4 -0.1
phage phage_bap4 -0.3 N.D. -0.3 +0.0 -0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.2 N.D. -0.4 -0.1 -0.1
phage phage_bap4 -0.0 N.D. -0.7 -0.0 +0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.2 N.D. -0.5 +0.1 -0.1
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL +0.0 N.D. -0.1 -0.1 -0.5
no phage control no phage control -0.6 N.D. -0.1 +0.1 +0.0
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.2 N.D. -0.3 +0.0 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.3 N.D. -0.2 +0.1 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL +0.1 N.D. -0.3 -0.0 -0.4
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.1 N.D. -0.4 -0.0 -0.2
vitamin M9 with Supernatant from Cyptococcus +0.0 N.D. +0.1 -0.2 -0.4
vitamin M9 with calcium pantothenate 10 mg/mL +0.3 N.D. -0.2 -0.1 -0.3
vitamin M9 with Supernatant from Cyptococcus +0.1 N.D. +0.2 -0.2 -0.2
complex community Community=Locust bean gum; Passage=1 -0.4 N.D. +0.2 +0.3 -0.1
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