Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_18295 and PS417_18300 are separated by 3 nucleotidesPS417_18300 and PS417_18305 are separated by 244 nucleotidesPS417_18305 and PS417_18310 are separated by 90 nucleotidesPS417_18310 and PS417_18315 overlap by 20 nucleotides PS417_18295: PS417_18295 - histidine kinase, at 3,988,500 to 3,989,885 _18295 PS417_18300: PS417_18300 - transcriptional regulator, at 3,989,889 to 3,990,572 _18300 PS417_18305: PS417_18305 - tRNA-Pro, at 3,990,817 to 3,990,893 _18305 PS417_18310: PS417_18310 - hypothetical protein, at 3,990,984 to 3,991,340 _18310 PS417_18315: PS417_18315 - integration host factor subunit alpha, at 3,991,321 to 3,991,623 _18315
Group Condition PS417_18295 PS417_18300 PS417_18305 PS417_18310 PS417_18315
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.0 -0.6 N.D. -4.6 N.D.
carbon source Carbon source D-Mannitol 2.5 mM -0.1 -0.2 N.D. -4.9 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 -0.1 N.D. -4.7 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Cysteine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.0 -0.2 N.D. -4.7 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.0 -0.1 N.D. -4.6 N.D.
motility_chemotaxis Method=Plug_approach; Chemical=None; Chemical_conc=0mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.0 +0.1 N.D. -4.7 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.0 +0.4 N.D. -4.8 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 +0.2 N.D. -4.7 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 -0.8 N.D. -3.5 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 +0.1 N.D. -4.5 N.D.
agar plate interaction control Taped volatile agar plate with no fungus -0.2 -0.2 N.D. -3.7 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.0 -0.3 N.D. -3.8 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Phenylalanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.0 -0.5 N.D. -3.5 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.0 -0.4 N.D. -3.6 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Cysteine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.1 -0.2 N.D. -3.9 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.1 -0.1 N.D. -3.9 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 -0.3 N.D. -3.5 N.D.
no stress control on plate growth on LB_noSalt plate -0.0 -0.3 N.D. -3.4 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.0 -0.5 N.D. -3.2 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.1 -0.2 N.D. -3.6 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.2 -0.1 N.D. -3.7 N.D.
stress R2A with Polymyxin B sulfate 0.002 mg/ml +0.1 -0.2 N.D. -3.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.0 +0.2 N.D. -3.6 N.D.
supernatant control Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB -0.1 +0.2 N.D. -3.6 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB +0.1 +0.4 N.D. -3.8 N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.2 +0.3 N.D. -3.2 N.D.
phage P. simiae ORA MOI 10 +0.2 +0.4 N.D. -3.2 N.D.
rhizosphere rhizosphere sample 2; outgrowth in LB -0.0 +0.3 N.D. +3.8 N.D.
rhizosphere rhizosphere sample 8; outgrowth in LB +0.1 +0.5 N.D. +3.5 N.D.
root root sample 6; outgrowth in LB +0.2 +1.0 N.D. +3.1 N.D.
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