Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF3563 and GFF3564 are separated by 58 nucleotidesGFF3564 and GFF3565 are separated by 42 nucleotidesGFF3565 and GFF3566 are separated by 92 nucleotidesGFF3566 and GFF3567 overlap by 10 nucleotides GFF3563 - L-carnitine dehydratase/bile acid-inducible protein F, at 74,560 to 75,684 GFF3563 GFF3564 - BUG/TctC family periplasmic protein, at 75,743 to 76,720 GFF3564 GFF3565 - Acyl-CoA dehydrogenase, at 76,763 to 78,469 GFF3565 GFF3566 - Transcriptional regulator, LysR family, at 78,562 to 79,461 GFF3566 GFF3567 - YihE protein, required for LPS synthesis, at 79,452 to 80,486 GFF3567
Group Condition GFF3563 GFF3564 GFF3565 GFF3566 GFF3567
complex community Community=arabino-guar; Passage=4 +0.6 +0.1 -0.1 -2.1 +0.1
complex community Community=guar; Passage=4 -0.4 +0.1 -0.2 -0.4 -0.4
complex community Community=guar; Passage=4 -0.5 -0.2 +0.4 -0.5 -0.1
no phage control no phage control -0.1 -0.1 -0.1 -0.4 -0.1
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.2 -0.1 -0.1 -0.3 -0.0
complex community Community=Kojac gum; Passage=1 +0.0 -0.2 -0.1 -0.2 -0.3
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL -0.2 -0.1 -0.2 -0.4 +0.2
no phage control no phage control +0.0 +0.1 -0.1 -0.5 -0.2
phage phage_bap4 -0.3 -0.1 -0.1 -0.4 +0.2
phage phage_bap4 -0.2 -0.2 -0.1 +0.2 -0.2
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL -0.2 -0.0 -0.1 -0.2 -0.0
complex community Community=arabino-guar; Passage=4 +0.0 +0.1 -0.5 -0.0 -0.2
complex community Community=Locust bean gum; Passage=4 -0.2 +0.2 +0.1 -0.8 +0.1
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.3 -0.1 +0.0 -0.2 +0.0
complex community Community=Locust bean gum; Passage=4 -0.1 -0.3 -0.0 +0.1 -0.1
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.0 -0.0 -0.0 -0.4 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL -0.2 +0.1 +0.0 -0.2 +0.1
complex community Community=guar; Passage=4 -0.2 +0.1 +0.1 +0.1 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL +0.1 +0.2 +0.0 -0.3 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.1 -0.0 -0.1 +0.3 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL +0.1 -0.1 -0.1 -0.2 +0.2
phage phage_bap4 +0.2 +0.1 -0.0 -0.3 +0.1
complex community Community=arabino-guar; Passage=4 -0.1 +0.4 -0.6 -0.2 +0.4
phage phage_bap4 -0.0 -0.1 -0.0 +0.1 +0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.1 +0.0 -0.0 -0.2 +0.2
complex community Community=guar; Passage=4 +0.3 -0.2 +0.1 -0.0 +0.1
complex community Community=Locust bean gum; Passage=4 +0.4 +0.1 +0.1 -0.2 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.1 +0.1 -0.1 -0.0 +0.4
complex community Community=Kojac gum; Passage=4 -0.0 -0.2 +0.3 +0.5 +0.2
complex community Community=Locust bean gum; Passage=4 -0.2 +0.1 +0.1 +1.0 +0.2
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