Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_18230	PS417_18235	PS417_18240	PS417_18245	PS417_18250
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	-0.4	-0.9	-0.4	-0.1	-1.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	-0.9	-0.2	-0.1	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-0.5	+0.2	-0.5	-1.6
seeds	Growth on radish seeds for 24 hours	-0.2	-0.9	-0.4	-0.1	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.5	+0.1	+0.2	-1.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.0	-1.4	-0.2	+0.2	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.6	-0.1	+0.1	-1.0
carbon source	L-Leucine (C)	-0.1	-1.1	-0.2	+0.2	-0.6
phage	JP1 MOI 1	-0.4	+0.4	+0.0	-0.8	-1.0
seeds	Growth on radish seeds for 72 hours	+0.4	-1.2	+0.1	-0.2	-0.6
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.0	-1.5	+0.3	-0.0	-0.4
phage	P. simiae ORA MOI 10	+0.3	-1.0	+0.2	-0.3	-0.7
soil	soil sample 3; outgrowth in LB	-0.1	-1.8	-0.3	+0.3	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.5	+0.4	+0.0	-0.1	-1.2
stress	methylglyoxal 0.032 vol%	+0.1	-0.7	+0.3	+0.1	-1.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	-1.0	+0.1	+0.2	-0.9
agar plate interaction control	Taped volatile agar plate with no fungus	-0.4	+0.5	-0.2	+0.3	-1.4
seeds	Growth on radish seeds for 72 hours	-0.4	-0.9	-0.4	+0.7	+0.2
motility	inner cut, LB soft agar motility assay	-0.3	+1.0	-0.3	-0.4	-0.6
phage	P. simiae OR Antrim MOI 1	-0.2	+1.0	+0.1	-0.2	-1.0
phage	JP1 MOI 10	-0.4	+0.8	-0.1	-0.6	+0.3
phage	P. simiae Grant Run MOI 10	-0.4	+1.0	+0.1	-0.1	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.9	-0.3	+0.2	+0.1	-0.7
phage	P. simiae OR Antrim MOI 10	-0.5	+1.1	-0.2	-0.3	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.0	-0.6	+0.0	+0.1	+2.0
phage	Wcs_0.1	-0.3	+1.1	-0.1	-0.1	+1.1
soil	soil sample 5; outgrowth in LB	+0.3	+0.7	-0.1	+0.4	+0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	+2.1	+0.1	-0.2	+0.2
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	+1.3	+0.5	-0.1	+0.4
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.6	+1.7	-0.1	+0.2	+0.4