Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF3559 and GFF3560 overlap by 11 nucleotidesGFF3560 and GFF3561 are separated by 36 nucleotidesGFF3561 and GFF3562 are separated by 96 nucleotidesGFF3562 and GFF3563 are separated by 17 nucleotides GFF3559 - no description, at 70,255 to 71,031 GFF3559 GFF3560 - hypothetical protein, at 71,021 to 72,040 GFF3560 GFF3561 - Glycosyltransferases involved in cell wall biogenesis, at 72,077 to 73,105 GFF3561 GFF3562 - UDP-glucose 6-dehydrogenase (EC 1.1.1.22), at 73,202 to 74,542 GFF3562 GFF3563 - L-carnitine dehydratase/bile acid-inducible protein F, at 74,560 to 75,684 GFF3563
Group Condition GFF3559 GFF3560 GFF3561 GFF3562 GFF3563
complex community Community=guar; Passage=4 -2.3 +0.2 -0.1 -2.0 -0.4
complex community Community=Locust bean gum; Passage=4 -0.2 -0.1 -0.6 -1.5 -0.2
complex community Community=arabino-guar; Passage=4 -0.9 +0.0 +0.0 -0.8 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.3 -0.1 +0.0 -0.4 -0.1
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.0 -0.0 -0.2 -0.2 -0.3
vitamin M9 with Supernatant from Cyptococcus -0.2 +0.0 -0.1 -0.2 -0.2
complex community Community=arabino-guar; Passage=4 -0.4 -0.0 +0.1 -0.8 +0.6
phage phage_bap4 -0.2 -0.3 -0.1 +0.2 -0.2
phage phage_bap4 -0.4 -0.0 -0.0 +0.1 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.0 +0.1 -0.1 -0.3 -0.1
complex community Community=Locust bean gum; Passage=4 -0.7 +0.4 +0.2 +0.0 -0.2
complex community Community=guar; Passage=4 -0.5 +0.2 -0.2 +0.7 -0.5
complex community Community=Kojac gum; Passage=4 -0.6 -0.2 -0.2 +0.8 -0.0
complex community Community=arabino-guar; Passage=4 +0.4 +0.2 -0.0 -0.7 +0.0
complex community Community=arabino-guar; Passage=4 +0.0 +0.4 +0.1 -0.5 -0.0
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL +0.2 -0.1 -0.2 +0.2 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.0 +0.0 +0.1 +0.2 -0.3
complex community Community=guar; Passage=4 +0.0 -0.1 +0.1 -0.1 +0.3
vitamin M9 with calcium pantothenate 10 mg/mL +0.2 -0.1 +0.2 -0.1 +0.1
phage phage_bap4 +0.1 -0.0 -0.1 +0.3 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL +0.2 +0.1 +0.1 -0.2 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.2 +0.1 +0.3 -0.1 +0.1
phage phage_bap4 -0.1 -0.0 +0.2 +0.2 +0.3
complex community Community=Kojac gum; Passage=1 +0.1 -0.0 +0.0 +0.4 +0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.2 +0.0 +0.0 +0.3 +0.1
no phage control no phage control +0.3 -0.0 -0.0 +0.4 +0.0
no phage control no phage control +0.0 +0.0 +0.1 +0.4 +0.2
complex community Community=Locust bean gum; Passage=4 +0.2 +0.1 +0.3 -0.4 +0.4
complex community Community=Locust bean gum; Passage=4 +0.7 +0.5 +0.4 -0.5 -0.1
complex community Community=guar; Passage=4 -0.0 +0.4 +0.2 +0.8 -0.2
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