Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_01805	PS417_01810	PS417_01815	PS417_01820	PS417_01825
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	-0.7	-0.8	+0.1	-1.3
soil	soil sample 5; outgrowth in LB	-0.1	-0.1	-0.5	+0.4	-1.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.1	-0.2	-0.3	+0.3	-1.0
phage	P. simiae OR1 MOI 0.1	-0.0	-0.3	+0.5	-1.0	-0.6
root	root sample 6; outgrowth in LB	-0.2	+0.9	-1.0	+0.3	-1.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.1	+0.3	-0.3	+0.2	-1.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.2	+0.1	-0.5	-0.9	+0.4
agar plate interaction control	Taped volatile agar plate with no fungus	+0.1	+0.3	-0.2	-1.0	+0.3
rhizosphere	rhizosphere sample 1; outgrowth in LB	+0.3	+0.0	-0.5	+0.4	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	+0.5	-1.0	+0.2	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.3	+0.7	-0.7	-0.0	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+0.2	+0.3	+0.3	-1.1
solid stress	Fraxetin 2 mM; solid stress	+0.1	+0.3	+0.6	+0.1	-1.1
phage	JP1 MOI 1	+0.4	-0.3	-0.2	-0.4	+0.7
phage	JP1 MOI 1	-0.0	+0.3	-0.7	-0.4	+1.1
nophagecontrol	Only library	-0.1	+0.2	-0.4	-0.5	+1.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-0.2	-0.5	+0.9	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.3	+0.0	-0.5	+0.6	+1.0
seeds	Growth on radish seeds for 72 hours	+0.1	+0.1	-1.1	+0.6	+1.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.5	-0.5	+1.2	+0.2	-0.4
phage	JP1 MOI 10	+0.3	+0.3	-0.2	-0.1	+1.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.1	-0.3	+0.5	+0.5	+0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	-0.3	+0.2	-0.1	+1.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	+0.8	+0.4	+0.5	-0.2
solid stress	80% Methanol 0.5 mM; solid stress	+0.2	+0.3	+0.8	-0.2	+0.5
seeds	Growth on radish seeds for 72 hours	+0.2	+0.2	-0.2	+0.6	+0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	+0.2	+0.3	+0.8	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+0.3	+0.6	+0.3	+1.0
carbon source	L-Valine (C)	+0.9	+0.6	-0.0	+0.2	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	+0.6	+0.1	+0.4	+1.5