Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_18170	PS417_18175	PS417_18180	PS417_18185	PS417_18190
motility	inner cut, LB soft agar motility assay	-0.2	+0.0	-0.1	-0.7	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-0.1	-0.2	-0.1	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	-0.1	-0.2	-1.0	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.2	-0.3	+0.2	+0.1	-1.0
carbon source	L-Valine (C)	+0.0	+0.1	+0.3	-0.3	-1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-0.3	+0.2	-0.4	-0.6
no phage control	Time6-nophage	+0.2	-0.5	-0.1	-0.1	-0.5
phage	JP1 MOI 1	-0.6	+0.2	-0.7	+0.2	-0.1
motility	inner cut, LB soft agar motility assay	-0.2	-0.6	-0.3	+0.4	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	+0.5	+0.2	-0.5	-0.9
soil	soil sample 5; outgrowth in LB	-0.4	+0.0	-0.2	-0.8	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.1	-0.4	-0.3	-0.4	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	-0.4	+0.3	-0.4	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	-0.6	+0.1	+0.6	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-0.1	-0.6	-0.3	+0.3	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	+0.6	+0.3	-0.7	-0.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.4	+0.4	+0.2	-0.3	-0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.5	-0.2	+0.1	-0.3	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	+0.9	-0.2	-0.3	-0.4
seeds	Growth on radish seeds for 72 hours	-0.5	+0.7	-0.3	-0.2	+0.6
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.2	+0.2	-0.0	+1.0	-0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.6	-0.1	+0.3	+0.0	-0.4
stress	Gentamicin 0.008 mg/ml	+0.4	-0.3	+0.2	-0.1	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.0	+0.1	+0.3	-0.7	+1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	+0.2	+0.2	-0.5	+0.7
carbon source	L-Valine (C)	+0.3	+0.6	+0.1	-0.6	+0.4
phage	P. simiae ORA MOI 0.1	-0.1	-0.3	+0.1	+0.8	+0.3
phage	JP1 MOI 10	-0.2	+0.4	-0.5	+0.7	+0.5
phage	JP1 MOI 0.1	+0.2	-0.1	-0.3	+0.7	+0.6
soil	soil sample 7; outgrowth in LB	-0.2	+0.4	+0.3	+0.3	+0.6