Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_18140	PS417_18145	PS417_18150	PS417_18155	PS417_18160
carbon source	2'-Deoxyinosine 5 mM (C)	-1.1	-0.8	-0.5	+0.1	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.0	+0.3	-0.5	-0.2	-1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	-0.2	-1.1	-0.1	-0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	-0.4	-0.6	+0.2	-0.8
no phage control	Time6-nophage	-1.2	+0.3	-0.4	-0.0	-0.4
carbon source	2-Deoxy-D-Ribose 10 mM (C)	-0.8	-0.7	+0.3	+0.1	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-0.0	-1.1	-0.3	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+1.0	-0.1	-1.6	+0.1	+0.1
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.8	-0.3	-0.6	-0.2	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.6	-0.3	-0.8	+0.6	-0.1
stress	Doxycycline hyclate 0.001 mg/ml	+0.7	+0.4	-0.3	+0.0	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	-0.3	-0.4	-0.3	+1.1
seeds	Growth on radish seeds for 72 hours	+0.1	-0.2	+1.1	+0.2	-0.9
phage	JP1 MOI 10	+0.6	-0.8	+1.2	+0.3	-0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.4	-0.4	+1.3	+0.2	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	-0.4	+0.9	-0.1	-0.3
seeds	Growth on radish seeds for 72 hours	+0.7	+0.2	+0.6	+0.1	-0.7
phage	P. simiae ORA MOI 0.1	+0.8	-0.0	-0.7	+0.0	+0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	+1.9	-0.7	+0.1	-0.3
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.4	+0.3	-0.2	+0.2	-0.4
soil	soil sample 2; outgrowth in LB	+0.8	-0.4	+0.1	+0.1	+0.6
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	+0.8	+0.5	-0.2	-0.2	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+1.0	-0.4	+0.6	-0.0	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	+1.2	-0.0	+0.1	+0.7
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.5	-0.3	-0.3	-0.0	+1.8
root	root sample 6; outgrowth in LB	+0.7	+0.7	-0.5	+0.0	+0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.3	+1.2	+0.2	+0.2	+0.9
phage	P. simiae OR Antrim MOI 0.1	+0.3	+0.2	+0.5	+0.3	+1.1
supernatant control	Vogels_fungal_media 0.1X	+0.7	+0.2	+0.6	+0.1	+1.1
stress	methylglyoxal 0.032 vol%	+0.5	+0.3	+1.0	+0.1	+0.8