Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_18120 and PS417_18125 are separated by 2 nucleotidesPS417_18125 and PS417_18130 are separated by 11 nucleotidesPS417_18130 and PS417_18135 are separated by 77 nucleotidesPS417_18135 and PS417_18140 are separated by 278 nucleotides PS417_18120: PS417_18120 - arginine ABC transporter ATP-binding protein, at 3,948,159 to 3,948,938 _18120 PS417_18125: PS417_18125 - polar amino acid ABC transporter permease, at 3,948,941 to 3,949,717 _18125 PS417_18130: PS417_18130 - ABC transporter substrate-binding protein, at 3,949,729 to 3,950,535 _18130 PS417_18135: PS417_18135 - GntR family transcriptional regulator, at 3,950,613 to 3,951,281 _18135 PS417_18140: PS417_18140 - hypothetical protein, at 3,951,560 to 3,952,000 _18140
Group Condition PS417_18120 PS417_18125 PS417_18130 PS417_18135 PS417_18140
agar plate interaction control Taped volatile agar plate with no fungus N.D. -0.3 -1.8 N.D. -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.1 -1.1 N.D. -1.0
no phage control Time6-nophage N.D. -0.0 -0.5 N.D. -1.2
carbon source 2'-Deoxyinosine 5 mM (C) N.D. -0.4 -0.2 N.D. -1.1
seeds Growth on radish seeds for 72 hours N.D. -0.2 -1.3 N.D. -0.0
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. -0.6 -0.3 N.D. -0.6
carbon source L-Valine (C) N.D. -0.7 -0.3 N.D. -0.3
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. +0.2 -0.9 N.D. -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.9 -0.5 N.D. +0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.6 -0.5 N.D. +0.4
carbon source Deoxyribonucleic from herring sperm 5 mg/mL (C) N.D. -0.3 +0.6 N.D. -0.9
stress Doxycycline hyclate 0.001 mg/ml N.D. +0.2 -1.3 N.D. +0.7
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.5 -0.4 N.D. +0.5
carbon source 2-Deoxy-D-Ribose 10 mM (C) N.D. -0.3 +0.8 N.D. -0.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.2 -1.1 N.D. +0.6
supernatant control Vogels_fungal_media 0.1X N.D. -0.8 -0.0 N.D. +0.7
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI N.D. -0.7 +0.4 N.D. +0.4
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) N.D. -0.3 +1.0 N.D. -0.7
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) N.D. +0.2 +0.7 N.D. -0.6
phage Wcs_1 N.D. +0.6 +0.5 N.D. -0.7
stress methylglyoxal 0.032 vol% N.D. +0.5 -0.5 N.D. +0.5
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB N.D. -0.5 +0.5 N.D. +0.5
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -0.3 +1.0 N.D. -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.4 +0.1 N.D. +1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.3 -0.1 N.D. +1.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. +0.4 -0.2 N.D. +1.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days N.D. +0.7 -0.1 N.D. +1.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. +1.5 -0.1 N.D. +0.5
phage Wcs_0.1 N.D. +0.2 +0.9 N.D. +0.8
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. +0.9 +0.1 N.D. +1.4
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