Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_01795	PS417_01800	PS417_01805	PS417_01810	PS417_01815
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-6.9	-0.2	+0.0	+0.5	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-6.9	+0.2	+0.1	-0.0	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-5.7	+0.6	-0.1	+0.6	+0.4
seeds	Growth on radish seeds for 72 hours	-1.6	-0.4	+0.1	+0.1	-1.1
root	root sample 6; outgrowth in LB	-2.0	-0.3	-0.2	+0.9	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-2.5	+0.2	-0.0	-0.1	+0.0
phage	P. simiae ORA MOI 0.1	-0.8	-0.2	+0.0	-0.9	-0.5
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-2.9	+0.3	-0.0	-0.1	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X	-2.5	-0.1	+0.1	+0.0	+0.1
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-2.6	+0.1	+0.2	-0.1	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-1.0	-0.7	+0.2	-0.0	-0.7
soil	soil sample 5; outgrowth in LB	-1.8	+0.3	-0.1	-0.1	-0.5
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-2.8	+0.6	+0.0	-0.1	+0.0
rhizosphere	rhizosphere sample 1; outgrowth in LB	-1.8	+0.1	+0.3	+0.0	-0.5
soil	soil sample 3; outgrowth in LB	-1.6	+0.2	+0.1	-0.1	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-2.1	+0.2	+0.1	+0.3	-0.3
seeds	Growth on radish seeds for 72 hours	-2.1	+0.4	+0.2	+0.2	-0.2
seeds	Growth on radish seeds for 72 hours	-2.2	+0.1	+0.2	+0.6	-0.1
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-2.3	+0.8	+0.4	+0.3	+0.2
seeds	Growth on radish seeds for 24 hours	-1.2	-0.1	-0.0	+0.6	+0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.2	+0.6	+0.5	+0.6	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.2	+0.3	+0.5	-0.5	+1.2
phage	JP1 MOI 10	+0.9	+0.8	+0.3	+0.3	-0.2
stress	nitrate 200 mM	+2.1	+0.0	+0.0	+0.1	-0.2
nitrogen source	Inosine (N)	+1.9	+0.4	-0.1	+0.0	+0.1
nitrogen source	Urea (N)	+2.2	+0.2	+0.1	+0.2	-0.1
solid stress	Fraxetin 2 mM; solid stress	+1.2	+0.4	+0.1	+0.3	+0.6
phage	P. simiae OR1 MOI 0.1	+2.3	+0.0	-0.0	-0.3	+0.5
nophagecontrol	Only library	+2.6	+0.5	-0.1	+0.2	-0.4
stress	1-ethyl-3-methylimidazolium chloride 200 mM	+2.4	+0.4	+0.3	-0.1	-0.0