Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_18110	PS417_18115	PS417_18120	PS417_18125	PS417_18130
agar plate interaction control	Taped volatile agar plate with no fungus	-0.2	-0.5	N.D.	-0.3	-1.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	-0.5	N.D.	-0.5	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	-0.4	N.D.	-0.9	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	-0.9	N.D.	-0.3	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-0.5	N.D.	+0.2	-1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-1.0	N.D.	+0.1	-0.1
soil	soil sample 5; outgrowth in LB	-0.2	-0.7	N.D.	-0.8	+0.4
supernatant control	Vogels_fungal_media 0.1X	+0.1	-0.6	N.D.	-0.8	-0.0
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.4	-0.6	N.D.	-0.5	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.3	N.D.	-1.1	-0.2
carbon source	Carbon source D-Mannitol 2.5 mM	+0.2	-0.2	N.D.	-0.6	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	-0.4	N.D.	+0.3	-0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.0	-0.6	N.D.	-0.6	+0.4
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	+0.3	-0.6	N.D.	-0.7	+0.4
seeds	Growth on radish seeds for 72 hours	+0.6	+0.3	N.D.	-0.2	-1.3
stress	Doxycycline hyclate 0.001 mg/ml	+0.2	+0.3	N.D.	+0.2	-1.3
stress	methylglyoxal 0.032 vol%	+0.3	-0.6	N.D.	+0.5	-0.5
soil	soil sample 8; outgrowth in LB	+0.3	-0.5	N.D.	+0.4	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+0.6	N.D.	+0.1	-1.1
phage	Wcs_1	-0.2	-0.9	N.D.	+0.6	+0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.5	+0.4	N.D.	+0.3	-0.3
phage	JP1 MOI 1	+0.2	-0.4	N.D.	-0.3	+0.7
agar plate interaction control	Taped volatile agar plate with no fungus	+0.3	-0.4	N.D.	-0.2	+0.6
phage	P. simiae Grant Run MOI 0.1	-0.2	+0.3	N.D.	-0.4	+0.6
phage	P. simiae OR1 MOI 0.1	+0.2	-0.3	N.D.	-0.2	+0.8
carbon source	Trisodium citrate (C)	+0.2	+0.2	N.D.	-0.5	+0.6
phage	Wcs_0.1	-0.1	-0.4	N.D.	+0.2	+0.9
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	+0.1	N.D.	-0.3	+1.0
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.4	-0.0	N.D.	+0.9	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.0	+0.5	N.D.	+1.5	-0.1