Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 552 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_18095	PS417_18100	PS417_18105	PS417_18110	PS417_18115
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	+0.1	-0.1	-3.1	-0.3	-0.4
phage	Wcs_1	-0.0	-0.5	-1.5	-0.2	-0.9
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.0	-0.5	-2.2	-0.1	-0.1
soil	soil sample 4; outgrowth in LB	+0.3	-0.5	-2.7	+0.1	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.4	-0.1	-1.6	-0.1	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	+0.0	-1.2	-0.2	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7	-0.2	-2.1	+0.2	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	+0.1	-2.0	-0.3	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.2	+0.2	-1.0	-0.3	+0.0
supernatant control	Vogels_fungal_media 0.1X	-0.0	-0.1	-2.2	-0.0	+0.1
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	-0.3	-0.2	-1.3	+0.3	-0.6
carbon source	Carbon source D-Mannitol 10 mM	+0.0	+0.3	-2.3	+0.1	-0.1
seeds	Growth on radish seeds for 72 hours	+0.3	-1.2	-1.6	+0.2	+0.3
carbon source	Trisodium citrate (C)	-0.3	-0.4	-1.2	+0.2	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	-0.1	-0.6	-0.2	-1.0
solid stress	Fraxetin 3 mM; solid stress	+0.3	-0.0	-2.1	+0.3	+0.2
phage	JP1 MOI 1	+0.4	-0.5	-0.9	+0.2	-0.4
rhizosphere	rhizosphere sample 8; outgrowth in LB	-0.1	+0.3	-1.5	+0.5	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	-0.4	+0.6	-0.3	-0.5
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.7	-0.4	+1.0	-0.2	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-0.4	+1.0	+0.2	-0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.6	-0.6	-1.0	+0.7	-0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	+0.4	-0.9	+0.4	+0.2
agar plate interaction control	Taped volatile agar plate with no fungus	+0.9	-0.6	+0.2	-0.2	-0.5
phage	P. simiae OR Antrim MOI 0.1	-0.7	-0.6	+0.9	+0.3	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.6	+0.7	-0.7	+0.2	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.4	+0.3	+2.0	-0.2	-0.3
seeds	Growth on radish seeds for 72 hours	-0.8	+0.6	+1.0	+0.2	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.0	+0.4	+1.1	-0.1	+0.0
stress	Gentamicin 0.008 mg/ml	+0.4	+0.5	+1.2	+0.6	+0.0