Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_18050	PS417_18055	PS417_18060	PS417_18065	PS417_18070
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-1.8	+0.1	N.D.	-3.9
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-3.9	-0.6	N.D.	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-1.1	-0.6	N.D.	-2.9
phage	P. simiae OR1 MOI 0.1	N.D.	-2.3	-0.7	N.D.	-1.1
phage	P. simiae ORA MOI 0.1	N.D.	-0.8	-0.8	N.D.	-1.6
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	N.D.	-1.6	-0.7	N.D.	-0.9
phage	P. simiae Grant Run MOI 10	N.D.	-2.5	+0.5	N.D.	-1.0
rhizosphere	rhizosphere sample 1; outgrowth in LB	N.D.	-0.7	-0.5	N.D.	-1.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.9	-0.6	N.D.	-1.4
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	+0.3	-1.8	N.D.	-1.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	-2.8	-0.5	N.D.	+0.8
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	N.D.	-1.6	+0.3	N.D.	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-2.2	-0.9	N.D.	+0.9
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-2.0	+0.3	N.D.	-0.5
soil	soil sample 4; outgrowth in LB	N.D.	-3.5	+0.6	N.D.	+0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-1.5	-1.0	N.D.	+1.1
phage	JP1 MOI 10	N.D.	-2.0	-0.4	N.D.	+1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.7	+0.2	N.D.	-2.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.9	-1.0	N.D.	+1.2
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-1.6	+0.3	N.D.	+1.2
carbon source	L-Valine (C)	N.D.	-1.4	+0.6	N.D.	+1.2
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	N.D.	+2.2	+0.4	N.D.	-2.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-1.2	+0.8	N.D.	+0.9
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	-1.2	+0.4	N.D.	+1.9
motility	inner cut, LB soft agar motility assay	N.D.	+1.4	-0.8	N.D.	+0.9
carbon source	2'-Deoxyinosine 5 mM (C)	N.D.	+1.1	+1.5	N.D.	-0.9
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	+0.9	-0.0	N.D.	+2.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+1.1	+0.3	N.D.	+1.9
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+1.1	+0.5	N.D.	+1.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	N.D.	+1.5	+1.0	N.D.	+1.3