Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_18035	PS417_18040	PS417_18045	PS417_18050	PS417_18055
soil	soil sample 4; outgrowth in LB	+0.1	-0.5	N.D.	N.D.	-3.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	+0.3	N.D.	N.D.	-3.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	-0.7	N.D.	N.D.	-2.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.8	N.D.	N.D.	-2.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.2	-0.5	N.D.	N.D.	-2.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	-1.0	N.D.	N.D.	-1.6
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.2	-0.4	N.D.	N.D.	-2.0
phage	P. simiae Grant Run MOI 10	+0.1	-0.1	N.D.	N.D.	-2.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-0.2	N.D.	N.D.	-2.2
soil	soil sample 5; outgrowth in LB	-0.2	-1.2	N.D.	N.D.	-1.1
phage	P. simiae Grant Run MOI 10	-0.2	-0.2	N.D.	N.D.	-2.1
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	-0.1	-1.1	N.D.	N.D.	-1.2
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x	+0.2	-1.3	N.D.	N.D.	-1.3
nophagecontrol	Only library	-0.1	-0.2	N.D.	N.D.	-2.0
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	+0.2	-0.8	N.D.	N.D.	-1.6
carbon source	Carbon source L-Citrulline 5 mM	+0.2	-0.5	N.D.	N.D.	-1.8
phage	JP1 MOI 10	+0.0	-0.2	N.D.	N.D.	-2.0
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x	+0.3	-0.6	N.D.	N.D.	-1.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-0.3	N.D.	N.D.	-1.8
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.3	+0.3	N.D.	N.D.	-1.8
phage	P. simiae OR1 MOI 0.1	-0.1	+0.8	N.D.	N.D.	-2.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.4	+0.3	N.D.	N.D.	-2.0
solid stress	Fraxetin 3 mM; solid stress	-0.0	+0.8	N.D.	N.D.	-1.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	+0.8	N.D.	N.D.	-1.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.4	+0.6	N.D.	N.D.	-1.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	-1.7	N.D.	N.D.	+1.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.2	+2.4	N.D.	N.D.	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.6	+0.9	N.D.	N.D.	+1.2
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.2	+0.9	N.D.	N.D.	+2.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.2	+5.8	N.D.	N.D.	-0.0