Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF3508 and GFF3509 are separated by 2 nucleotidesGFF3509 and GFF3510 overlap by 4 nucleotidesGFF3510 and GFF3511 are separated by 351 nucleotidesGFF3511 and GFF3512 are separated by 64 nucleotides GFF3508 - Multidrug efflux system, outer membrane factor lipoprotein => OpmD of MexHI-OpmD system, at 11,200 to 12,633 GFF3508 GFF3509 - Multidrug efflux system, inner membrane proton/drug antiporter (RND type) => MexI of MexHI-OpmD system, at 12,636 to 15,716 GFF3509 GFF3510 - Multidrug efflux system, membrane fusion component => MexH of MexHI-OpmD system, at 15,713 to 16,822 GFF3510 GFF3511 - no description, at 17,174 to 18,160 GFF3511 GFF3512 - no description, at 18,225 to 18,578 GFF3512
Group Condition GFF3508 GFF3509 GFF3510 GFF3511 GFF3512
complex community Community=arabino-guar; Passage=4 -1.6 +0.3 -3.9 +0.8 -0.2
complex community Community=Locust bean gum; Passage=4 +0.1 -0.1 -3.6 +0.6 +0.4
vitamin M9 with calcium pantothenate 10 mg/mL -0.0 -0.0 -1.8 -0.7 +0.2
complex community Community=guar; Passage=4 -0.5 +0.1 -2.4 +0.4 +0.1
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.1 -0.1 -1.7 -0.4 +0.3
complex community Community=Locust bean gum; Passage=4 -0.4 -0.1 -1.7 +0.3 -0.1
complex community Community=Kojac gum; Passage=4 -0.4 -0.2 -0.6 -0.3 -0.4
no phage control no phage control -0.1 +0.0 -1.6 -0.3 +0.1
phage phage_bap4 -0.2 -0.0 -1.1 -0.2 -0.4
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL +0.1 +0.0 -1.3 -0.6 +0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.3 +0.0 -1.6 -0.2 -0.2
vitamin M9 with Supernatant from Cyptococcus +0.1 +0.0 -1.3 -0.4 -0.0
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.1 -0.1 -0.8 -0.1 -0.3
phage phage_bap4 -0.1 +0.0 -1.5 +0.2 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.2 +0.1 -0.7 -0.2 -0.2
complex community Community=Locust bean gum; Passage=4 +0.2 +0.0 -1.3 +0.1 -0.1
vitamin M9 with Supernatant from Cyptococcus +0.1 +0.1 -1.0 -0.2 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.2 +0.0 -1.2 +0.0 +0.0
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL +0.4 -0.0 -0.9 -0.3 -0.2
complex community Community=guar; Passage=4 -0.6 +0.1 -0.8 +1.2 -0.8
phage phage_bap4 -0.2 -0.1 -0.8 +0.4 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.0 +0.1 +0.3 -0.8 -0.2
complex community Community=guar; Passage=4 +0.1 +0.3 -1.7 +1.0 -0.4
complex community Community=Kojac gum; Passage=1 -0.1 +0.1 -1.3 +0.7 +0.1
complex community Community=arabino-guar; Passage=4 -0.6 -0.2 -0.9 +1.5 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.1 +0.0 +0.7 -0.3 -0.3
complex community Community=arabino-guar; Passage=4 +0.5 +0.0 -0.9 +0.9 +0.3
phage phage_bap4 +0.0 +0.0 +0.8 +0.4 +0.1
phage phage_bap4 +0.0 +0.1 +0.8 +0.4 +0.3
complex community Community=Locust bean gum; Passage=4 -0.1 +0.1 +0.3 +0.7 +0.7
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