Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_17925	PS417_17930	PS417_17935	PS417_17940	PS417_17945
phage	Wcs_1	+0.4	-1.5	+0.1	-0.2	-4.6
phage	JP1 MOI 0.1	+0.0	-1.0	+0.1	-0.4	-3.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.8	+0.1	-0.9	-0.2	-2.4
soil	soil sample 3; outgrowth in LB	-1.1	-1.0	-0.5	-0.3	-1.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	-1.3	-0.5	-0.7	-2.1
carbon source	2'-Deoxyinosine 5 mM (C)	+0.1	-2.4	-0.7	-0.3	-0.6
agar plate interaction control	Taped volatile agar plate with no fungus	-0.6	-1.0	-1.2	+0.0	-0.9
stress	Gentamicin 0.008 mg/ml	-0.5	+0.8	+0.8	+0.0	-4.2
motility_chemotaxis	Method=Plug_approach; Chemical=None; Chemical_conc=0mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.6	-0.6	-0.5	-0.1	-1.3
soil	soil sample 5; outgrowth in LB	-1.4	-0.6	-0.8	-0.0	-0.4
soil	soil sample 2; outgrowth in LB	-0.5	+0.1	-0.5	+0.1	-2.2
rhizosphere	rhizosphere sample 1; outgrowth in LB	-1.6	+0.1	-0.2	+0.5	-1.4
seeds	Growth on radish seeds for 72 hours	+0.3	-1.6	+0.0	+0.1	-1.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7	+0.4	-1.2	+0.1	-1.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.6	-0.4	-0.9	+0.1	+0.4
phage	JP1 MOI 1	-0.5	-0.0	+0.4	-0.1	-2.0
stress	Doxycycline hyclate 0.001 mg/ml	-0.6	+0.7	+0.2	-0.4	-1.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.9	-0.3	+0.3	+0.5	-3.2
phage moi 100	Time6-phageFRS	-1.2	+0.5	-0.1	+0.2	-1.2
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	-0.1	+0.7	-0.2	+0.2	-2.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.9	+0.9	-0.3	-0.5	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.4	+1.0	-0.9	-0.1	-0.9
root	root sample 6; outgrowth in LB	+0.5	+0.3	-1.0	+0.4	-1.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+1.0	-2.4	-0.2	+0.5	+0.8
phage	P. simiae ORA MOI 0.1	+1.0	-0.8	-0.6	+0.1	+0.8
phage	P. simiae Grant Run MOI 10	+0.4	-1.3	+0.4	+0.2	+0.9
phage	P. simiae ORA MOI 10	+0.8	-0.6	-0.2	+0.4	+1.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	-0.5	+0.7	+0.0	+2.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.1	+0.3	-0.6	-0.0	+3.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7	-0.2	+0.4	-0.1	+3.5