Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_17905	PS417_17910	PS417_17915	PS417_17920	PS417_17925
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	-0.2	-0.4	+0.1	-1.6
rhizosphere	rhizosphere sample 1; outgrowth in LB	+0.0	-0.1	-0.1	-0.0	-1.6
soil	soil sample 3; outgrowth in LB	-0.1	-0.3	+0.1	-0.5	-1.1
stress	Doxycycline hyclate 0.001 mg/ml	-0.4	-0.3	-0.2	-0.4	-0.6
phage moi 100	Time6-phageFRS	+0.1	-0.3	+0.2	-0.3	-1.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.3	-0.3	-0.2	+0.2	-0.8
phage	JP1 MOI 10	+0.2	-0.1	-0.3	-0.1	-1.1
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.1	+0.2	-0.2	-0.4	-0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	-0.4	-0.2	+0.2	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.5	+0.0	-0.7	+0.3	-0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	+0.2	-0.2	+0.4	-1.0
carbon source	L-Valine (C)	-0.3	+0.2	-0.2	-0.6	+0.3
motility	inner cut, LB soft agar motility assay	+0.2	+0.4	+0.0	-0.5	-0.6
soil	soil sample 8; outgrowth in LB	+0.0	+0.1	+0.5	+0.1	-1.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X	-0.2	+0.0	+0.3	+0.3	-0.9
soil	soil sample 5; outgrowth in LB	+0.5	+0.1	-0.2	+0.6	-1.4
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.2	+0.2	+0.3	-0.9	+0.3
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	+0.2	+0.1	+0.0	+0.4	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.3	+0.3	+0.1	+0.4	-0.7
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.9	+0.1	+0.3	-0.6	-0.8
soil	soil sample 7; outgrowth in LB	+0.4	+0.3	+0.2	-0.4	-0.5
carbon source	2'-Deoxyinosine 5 mM (C)	-0.5	+0.0	+0.3	-0.2	+0.7
stress	methylglyoxal 0.032 vol%	-0.4	+0.2	+0.4	+0.4	-0.2
phage	P. simiae ORA MOI 10	-0.2	+0.0	-0.2	+0.5	+0.8
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.3	-0.4	-0.2	+0.2	+1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	-0.1	+0.0	-0.3	+0.9
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.5	+0.2	-0.3	+0.1	+0.7
seeds	Growth on radish seeds for 24 hours	+0.2	+0.4	-0.0	+0.9	-0.4
phage	P. simiae ORA MOI 0.1	+0.2	+0.2	-0.0	+0.4	+1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+1.3	+0.5	+0.2	+1.7	+0.6