Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_17885	PS417_17890	PS417_17895	PS417_17900	PS417_17905
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.1	-0.3	N.D.	-1.2	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.1	-0.9	N.D.	-0.4	-0.2
stress	methylglyoxal 0.032 vol%	+0.4	-1.1	N.D.	-0.3	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.9	+0.1	N.D.	-0.8	+0.2
phage	JP1 MOI 1	+0.2	-0.6	N.D.	-0.4	-0.5
carbon source	L-Valine (C)	-0.5	+0.4	N.D.	-0.8	-0.3
stress	Doxycycline hyclate 0.001 mg/ml	-0.5	+0.3	N.D.	-0.7	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	-0.7	N.D.	+0.3	-0.4
seeds	Growth on radish seeds for 72 hours	-0.0	+0.4	N.D.	-0.8	-0.5
phage	P. simiae Grant Run MOI 10	-0.7	+0.4	N.D.	-0.4	-0.2
carbon source	2'-Deoxyinosine 5 mM (C)	+0.5	+0.0	N.D.	-0.8	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.5	-0.8	N.D.	-0.1	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	-0.9	N.D.	+0.3	-0.2
phage	P. simiae ORA MOI 0.1	-0.6	+0.3	N.D.	-0.6	+0.4
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	-0.6	N.D.	+0.9	-0.1
phage	P. simiae OR1 MOI 0.1	+0.3	+0.6	N.D.	-0.5	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.8	-0.1	N.D.	+1.4	-0.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	+0.9	N.D.	+0.2	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-0.0	N.D.	+1.2	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.0	+0.0	N.D.	+0.2	-0.5
motility	outer cut, LB soft agar motility assay	+0.3	+0.7	N.D.	+0.2	-0.4
phage	JP1 MOI 1	+0.7	-0.5	N.D.	+0.4	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.8	+0.3	N.D.	-0.6	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.4	-0.3	N.D.	+0.8	+0.3
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.1	+0.1	N.D.	+0.5	+0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.0	-0.1	N.D.	+1.6	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.5	-0.2	N.D.	+0.1	+1.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	+0.7	N.D.	+0.8	+0.1
soil	soil sample 7; outgrowth in LB	+0.1	+0.9	N.D.	+0.9	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.3	+0.6	N.D.	+2.6	-0.3