Fitness for 5 genes in Pseudomonas simiae WCS417

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 554 experiments or choose conditions or try the comparative fitness browser

500 ntPS417_17870 and PS417_17875 are separated by 207 nucleotidesPS417_17875 and PS417_17880 are separated by 135 nucleotidesPS417_17880 and PS417_17885 are separated by 13 nucleotidesPS417_17885 and PS417_17890 overlap by 8 nucleotides PS417_17870: PS417_17870 - homoprotocatechuate degradative operon repressor, at 3,901,199 to 3,901,627 _17870 PS417_17875: PS417_17875 - FAD-dependent oxidoreductase, at 3,901,835 to 3,903,133 _17875 PS417_17880: PS417_17880 - hypothetical protein, at 3,903,269 to 3,903,634 _17880 PS417_17885: PS417_17885 - moaF, at 3,903,648 to 3,904,469 _17885 PS417_17890: PS417_17890 - 3-oxoacyl-ACP reductase, at 3,904,462 to 3,905,262 _17890
Group Condition PS417_17870 PS417_17875 PS417_17880 PS417_17885 PS417_17890
stress methylglyoxal 0.032 vol% N.D. -0.8 N.D. +0.4 -1.1
no stress control on plate growth on LB_noSalt plate N.D. -0.2 N.D. -0.2 -1.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.2 N.D. -0.4 -0.7
carbon source Carbon source D-Mannitol 2.5 mM N.D. -0.2 N.D. -0.5 -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.0 N.D. +0.3 -0.9
phage P. simiae OR Antrim MOI 10 N.D. +0.4 N.D. -0.7 -0.2
phage P. simiae ORA MOI 0.1 N.D. -0.3 N.D. -0.6 +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.3 N.D. -0.9 +0.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -0.1 N.D. +0.4 -0.7
liquid stress Fraxetin 3 mM; liquid stress N.D. -0.2 N.D. -0.6 +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. -0.4 N.D. -0.4 +0.4
phage P. simiae OR Antrim MOI 10 N.D. +0.5 N.D. -0.5 -0.3
carbon source 2-Deoxy-D-Ribose 10 mM (C) N.D. +0.2 N.D. -0.9 +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.3 N.D. -0.7 +0.2
phage JP1 MOI 1 N.D. -0.3 N.D. +0.7 -0.5
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x N.D. +0.0 N.D. -0.5 +0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. +0.5 N.D. +0.5 -0.8
phage P. simiae Grant Run MOI 10 N.D. +0.5 N.D. -0.7 +0.4
solid stress Fraxetin 3 mM; solid stress N.D. +0.1 N.D. +0.8 -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.4 N.D. +0.0 +0.9
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -0.4 N.D. +0.2 +0.9
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. +0.9 N.D. +0.2 -0.4
soil soil sample 7; outgrowth in LB N.D. -0.2 N.D. +0.1 +0.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.0 N.D. +0.5 +0.7
phage P. simiae OR Antrim MOI 1 N.D. +0.8 N.D. +0.1 +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.3 N.D. +0.4 +0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. +0.3 N.D. +0.6 +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.2 N.D. +0.4 +0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.3 N.D. +0.8 +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. +2.0 N.D. +0.2 +0.1
remove
PS417_17870
plot		 remove
PS417_17875
plot		 remove
PS417_17880		 remove
PS417_17885
plot		 remove
PS417_17890
plot