Fitness for 5 genes in Variovorax sp. SCN45

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 61 experiments or choose conditions or try the comparative fitness browser

500 ntGFF3485 and GFF3486 are separated by 19 nucleotidesGFF3486 and GFF3487 are separated by 10 nucleotidesGFF3487 and GFF3488 are separated by 262 nucleotidesGFF3488 and GFF3489 are separated by 86 nucleotides GFF3485 - Ferredoxin, 2Fe-2S, at 307,766 to 308,089 GFF3485 GFF3486 - glutamine synthetase family protein, at 308,109 to 309,557 GFF3486 GFF3487 - InterPro IPR005806 COGs COG2146, at 309,568 to 310,902 GFF3487 GFF3488 - Transcriptional regulator, GntR family, at 311,165 to 311,899 GFF3488 GFF3489 - Transcriptional regulator, AcrR family, at 311,986 to 312,603 GFF3489
Group Condition GFF3485 GFF3486 GFF3487 GFF3488 GFF3489
complex community Community=guar; Passage=4 -1.9 +0.2 -0.1 -0.3 -0.1
complex community Community=arabino-guar; Passage=4 -0.1 -0.3 -0.0 -0.8 -0.6
complex community Community=arabino-guar; Passage=4 -0.3 +0.0 +0.0 -1.1 -0.3
complex community Community=Locust bean gum; Passage=4 -1.3 -0.5 -0.3 +0.0 +0.5
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL -1.1 -0.1 -0.1 -0.1 -0.1
complex community Community=guar; Passage=4 -0.6 -0.3 +0.1 -0.5 +0.0
complex community Community=arabino-guar; Passage=4 -0.1 -0.3 +0.2 -0.9 -0.1
vitamin M9 with Supernatant from Cyptococcus -0.2 -0.1 -0.0 -0.6 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL -0.3 -0.0 +0.0 -0.8 +0.2
complex community Community=Locust bean gum; Passage=4 -1.0 -0.2 -0.3 +0.2 +0.5
vitamin M9 with Supernatant from Cyptococcus -0.3 -0.1 +0.0 -0.1 -0.3
complex community Community=Locust bean gum; Passage=4 -0.6 -0.1 -0.1 -0.3 +0.6
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.2 +0.0 +0.0 -0.4 -0.2
complex community Community=guar; Passage=4 -0.7 +0.3 -0.2 +0.2 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.3 -0.0 +0.1 -0.4 -0.1
complex community Community=Kojac gum; Passage=1 -0.5 +0.0 -0.1 +0.2 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.3 -0.2 +0.0 -0.3 +0.0
complex community Community=arabino-guar; Passage=4 +1.3 -0.2 -0.2 -0.5 -0.5
vitamin M9 with calcium pantothenate 10 mg/mL +0.3 +0.1 -0.1 -0.4 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.4 +0.1 +0.0 -0.4 -0.0
complex community Community=Locust bean gum; Passage=1 -0.3 +0.1 +0.1 +0.3 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.5 -0.2 +0.2 -0.2 +0.0
complex community Community=guar; Passage=4 +0.3 +0.1 +0.0 -0.6 +0.4
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.5 +0.0 -0.0 +0.2 -0.2
phage phage_bap4 +0.2 -0.2 +0.2 +0.1 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL +0.6 -0.0 +0.1 -0.2 +0.1
no phage control no phage control +0.6 +0.0 +0.1 -0.0 -0.0
phage phage_bap4 +0.6 -0.1 +0.0 +0.1 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.5 +0.1 +0.1 -0.0 +0.1
complex community Community=Kojac gum; Passage=4 +0.9 +0.1 -0.0 -0.1 +0.5
remove
GFF3485
plot		 remove
GFF3486
plot		 remove
GFF3487		 remove
GFF3488
plot		 remove
GFF3489
plot