Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_17835	PS417_17840	PS417_17845	PS417_17850	PS417_17855
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.9	-1.0	-0.8	N.D.	-0.6
soil	soil sample 4; outgrowth in LB	-0.9	-0.8	-0.6	N.D.	-0.8
phage	Wcs_1	-0.4	+0.0	-0.9	N.D.	-1.4
soil	soil sample 2; outgrowth in LB	-1.1	-0.6	-0.4	N.D.	-0.3
seeds	Growth on radish seeds for 72 hours	-0.3	-0.8	+0.2	N.D.	-1.4
soil	soil sample 6; outgrowth in LB	+0.6	-1.9	+0.1	N.D.	-1.1
rhizosphere	rhizosphere sample 8; outgrowth in LB	-0.1	-1.6	+0.2	N.D.	-0.7
phage	P. simiae OR Antrim MOI 0.1	-0.5	-0.9	+0.2	N.D.	-0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.1	-1.3	+0.5	N.D.	-1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.5	-1.1	+0.4	N.D.	+0.2
stress	1-ethyl-3-methylimidazolium chloride 200 mM	+0.3	-0.8	-0.4	N.D.	-1.0
phage	P. simiae Grant Run MOI 10	+0.4	-1.3	+0.2	N.D.	-1.1
rhizosphere	rhizosphere sample 2; outgrowth in LB	-1.6	-0.2	+0.6	N.D.	-0.2
soil	soil sample 7; outgrowth in LB	+0.8	-0.6	-0.3	N.D.	-1.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	-0.7	+0.3	N.D.	-1.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-1.2	+0.6	N.D.	-0.4
stress	Nalidixic 0.015 mg/ml	-1.4	+0.8	-0.1	N.D.	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.2	+1.1	+0.5	N.D.	-0.7
phage moi 100	Time6-phageFRS	-0.6	+0.6	-0.7	N.D.	+0.7
phage	JP1 MOI 0.1	+1.1	+0.5	-0.3	N.D.	-0.6
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.3	-0.9	+0.2	N.D.	+1.1
root	root sample 6; outgrowth in LB	+0.2	-0.5	-0.5	N.D.	+1.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	+0.7	+0.8	N.D.	-1.2
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.3	+0.2	-0.5	N.D.	+1.7
agar plate interaction control	Taped volatile agar plate with no fungus	+0.5	+1.4	+0.1	N.D.	-0.8
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	+0.8	-0.6	+0.3	N.D.	+0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.2	+1.8	+0.1	N.D.	-0.4
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+1.3	+0.4	+0.3	N.D.	+0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.7	+0.7	+0.6	N.D.	+0.5
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+1.0	-0.1	+0.1	N.D.	+1.5