Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF3481 and GFF3482 overlap by 4 nucleotidesGFF3482 and GFF3483 overlap by 4 nucleotidesGFF3483 and GFF3484 are separated by 67 nucleotidesGFF3484 and GFF3485 are separated by 95 nucleotides GFF3481 - ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 303,823 to 304,593 GFF3481 GFF3482 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 304,590 to 305,552 GFF3482 GFF3483 - ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 305,549 to 306,409 GFF3483 GFF3484 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 306,477 to 307,670 GFF3484 GFF3485 - Ferredoxin, 2Fe-2S, at 307,766 to 308,089 GFF3485
Group Condition GFF3481 GFF3482 GFF3483 GFF3484 GFF3485
complex community Community=arabino-guar; Passage=4 -1.8 +0.0 -0.9 -0.4 -0.3
complex community Community=arabino-guar; Passage=4 -2.7 -0.4 +0.0 -0.1 -0.1
complex community Community=guar; Passage=4 +1.0 -0.1 -0.7 -0.2 -1.9
complex community Community=Kojac gum; Passage=1 -0.2 +0.1 -0.2 +0.0 -0.5
complex community Community=Locust bean gum; Passage=4 +0.8 +0.2 -0.6 -0.1 -1.0
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL +0.2 +0.2 +0.0 +0.1 -1.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.7 +0.1 +0.1 -0.2 +0.4
complex community Community=Locust bean gum; Passage=4 +0.5 +0.3 +0.1 +0.2 -1.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.9 +0.2 +0.1 +0.0 +0.5
complex community Community=guar; Passage=4 +0.4 -0.1 +0.2 +0.1 -0.7
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.3 +0.1 -0.2 -0.0 +0.5
complex community Community=Locust bean gum; Passage=1 -0.1 +0.3 +0.1 +0.0 -0.3
vitamin M9 with calcium pantothenate 10 mg/mL +0.1 +0.1 +0.3 +0.0 -0.3
vitamin M9 with calcium pantothenate 10 mg/mL +0.2 +0.1 -0.1 -0.2 +0.3
phage phage_bap4 +0.2 -0.0 -0.2 -0.0 +0.6
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.3 +0.2 +0.1 +0.1 +0.5
phage phage_bap4 +0.5 +0.0 -0.1 -0.1 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL -0.6 +0.3 +0.0 +0.1 +0.6
complex community Community=guar; Passage=4 +1.2 -0.1 +0.1 -0.1 -0.6
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.2 +0.1 +0.2 -0.1 +0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.3 +0.0 +0.2 -0.1 +0.3
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL +0.5 -0.2 +0.3 +0.1 -0.0
no phage control no phage control +0.1 -0.1 +0.2 +0.1 +0.6
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.3 +0.5 -0.0 +0.1 +0.2
vitamin M9 with Supernatant from Cyptococcus +0.7 +0.2 +0.0 +0.1 -0.0
no phage control no phage control +0.5 +0.1 +0.1 -0.1 +0.4
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.3 +0.1 +0.0 -0.1 +0.7
phage phage_bap4 +0.8 +0.3 +0.2 -0.0 -0.1
complex community Community=Kojac gum; Passage=4 +0.4 +0.3 -0.2 -0.1 +0.9
complex community Community=arabino-guar; Passage=4 +0.1 +0.1 +0.2 +0.0 +1.3
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