Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 552 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_17815	PS417_17820	PS417_17825	PS417_17830	PS417_17835
phage	P. simiae ORA MOI 0.1	N.D.	-0.0	-0.2	-1.3	-0.9
carbon source	2'-Deoxyinosine 5 mM (C)	N.D.	-0.3	-0.4	-1.2	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.2	-0.3	-2.0	-0.3
carbon source	Carbon source D-Mannitol 2.5 mM	N.D.	-0.1	-0.1	-1.0	-0.9
phage	P. simiae OR1 MOI 0.1	N.D.	+0.1	+0.1	-1.4	-0.7
no phage control	Time6-nophage	N.D.	+0.1	-0.3	-0.8	-0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.1	-0.0	-0.9	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.3	+0.1	-1.5	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.1	-0.5	-1.0	-0.1
rhizosphere	rhizosphere sample 2; outgrowth in LB	N.D.	+0.1	-0.1	-0.1	-1.6
phage	P. simiae OR Antrim MOI 10	N.D.	+0.1	-0.8	-0.4	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.0	+0.0	-0.2	-1.5
stress	Nalidixic 0.015 mg/ml	N.D.	-0.1	+0.1	-0.0	-1.4
supernatant control	Vogels_fungal_media; pH 5.5	N.D.	+0.1	+0.2	-0.6	-0.9
agar plate interaction control	Taped volatile agar plate with no fungus	N.D.	+0.5	-0.0	-1.9	+0.5
seeds	Growth on radish seeds for 72 hours	N.D.	+0.1	+0.6	-1.0	-0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	+0.3	+0.6	-0.4	-1.2
soil	soil sample 7; outgrowth in LB	N.D.	-0.0	-0.2	-1.2	+0.8
carbon source	D-Galacturonic Acid (C)	N.D.	+0.2	-0.2	-0.9	+0.3
soil	soil sample 2; outgrowth in LB	N.D.	-0.1	-0.2	+0.8	-1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	+0.0	+0.3	-1.1	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.4	+0.4	+0.5	-0.9
soil	soil sample 8; outgrowth in LB	N.D.	+0.2	+0.2	-1.0	+0.5
phage	JP1 MOI 1	N.D.	-0.0	+0.1	+1.0	-1.0
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	N.D.	-0.2	-0.2	-0.5	+1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.2	-0.6	+0.3	+0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.2	-0.6	+0.4	+0.5
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	N.D.	+0.3	-0.3	-0.3	+0.8
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.3	-0.3	+0.7	+0.6
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	-0.0	+0.6	-0.1	+1.3