Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_17800	PS417_17805	PS417_17810	PS417_17815	PS417_17820
phage	P. simiae Grant Run MOI 10	-0.3	-1.5	+0.0	N.D.	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	-1.6	-0.3	N.D.	+0.1
phage	JP1 MOI 1	-0.2	-1.7	+0.1	N.D.	-0.0
phage	P. simiae OR1 MOI 0.1	-0.1	-0.8	-0.8	N.D.	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	-0.9	+0.1	N.D.	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	-1.1	+0.0	N.D.	-0.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	-1.4	+0.4	N.D.	+0.1
solid stress	Scopoletin 3 mM; solid stress	+0.2	-1.1	-0.2	N.D.	-0.0
carbon source	L-Valine (C)	-0.6	-0.6	+0.3	N.D.	-0.1
supernatant	LB 0.5x with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x	+0.2	-0.9	-0.3	N.D.	+0.2
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	+0.2	-1.1	-0.1	N.D.	+0.1
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.6	-1.4	+0.2	N.D.	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.7	+0.3	N.D.	+0.2
agar plate interaction control	Taped volatile agar plate with no fungus	+0.2	-0.4	-0.5	N.D.	+0.5
seeds	Growth on radish seeds for 72 hours	-0.8	+1.4	-0.8	N.D.	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	+0.4	-0.8	+0.2	N.D.	+0.1
soil	soil sample 7; outgrowth in LB	-0.3	-0.4	+0.8	N.D.	-0.0
seeds	Growth on radish seeds for 24 hours	-0.0	+1.2	-0.7	N.D.	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.1	-0.5	+0.8	N.D.	+0.2
phage	Wcs_1	-0.2	+1.2	-0.5	N.D.	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.9	-0.5	+0.1	N.D.	+0.2
seeds	Growth on radish seeds for 72 hours	+0.1	+1.2	-0.4	N.D.	-0.1
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	+0.5	+0.4	-0.4	N.D.	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.0	+1.1	-0.3	N.D.	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.3	+0.5	+0.6	N.D.	-0.0
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.7	+0.8	+0.0	N.D.	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB	+0.3	+0.8	+0.3	N.D.	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.6	+0.5	+0.3	N.D.	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+1.2	+0.7	N.D.	+0.1
carbon source	L-Valine (C)	+0.8	+0.5	+0.4	N.D.	+0.0