Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_17770 and PS417_17775 are separated by 1 nucleotidesPS417_17775 and PS417_17780 are separated by 276 nucleotidesPS417_17780 and PS417_17785 are separated by 174 nucleotidesPS417_17785 and PS417_17790 are separated by 316 nucleotides PS417_17770: PS417_17770 - ABC transporter permease, at 3,878,340 to 3,880,802 _17770 PS417_17775: PS417_17775 - ABC transporter ATP-binding protein, at 3,880,804 to 3,881,472 _17775 PS417_17780: PS417_17780 - Ais protein, at 3,881,749 to 3,882,423 _17780 PS417_17785: PS417_17785 - 4-amino-4-deoxy-L-arabinose transferase, at 3,882,598 to 3,884,253 _17785 PS417_17790: PS417_17790 - ABC transporter, at 3,884,570 to 3,885,283 _17790
Group Condition PS417_17770 PS417_17775 PS417_17780 PS417_17785 PS417_17790
stress Polymyxin B sulfate 0.006 mg/ml +0.2 N.D. -1.1 -6.2 -0.3
soil soil sample 4; outgrowth in LB +0.0 N.D. -3.2 -0.7 -0.6
soil soil sample 7; outgrowth in LB +0.0 N.D. -3.4 -0.6 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 N.D. -3.1 +0.1 -0.0
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.6 N.D. -0.7 -1.8 +0.0
soil soil sample 2; outgrowth in LB +0.0 N.D. -1.5 -0.6 -0.9
phage P. simiae Grant Run MOI 0.1 -0.5 N.D. -2.2 -0.3 +0.4
stress Aluminum chloride 4 mM +0.2 N.D. -2.3 -0.4 +0.0
supernatant control Vogels_fungal_media 0.1X -0.1 N.D. -1.6 -0.1 -0.5
stress Neomycin 0.04 mg/ml -0.1 N.D. -0.3 -1.9 +0.1
rhizosphere rhizosphere sample 1; outgrowth in LB -0.5 N.D. -0.9 -1.1 +0.3
soil soil sample 5; outgrowth in LB +0.2 N.D. -2.2 -0.0 -0.0
root root sample 6; outgrowth in LB +0.2 N.D. -2.1 -0.9 +0.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.1 N.D. -1.4 +0.2 -0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.0 N.D. -1.8 -0.4 +0.4
soil soil sample 3; outgrowth in LB +0.4 N.D. -1.4 -0.3 -0.4
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.2 N.D. -0.3 -1.6 +0.2
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 N.D. -1.9 +0.3 -0.0
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 N.D. -1.8 +0.6 -0.2
phage JP1 MOI 10 +0.3 N.D. -1.9 +0.1 +0.5
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 N.D. -1.8 +0.4 +0.5
stress Gentamicin 0.008 mg/ml +0.3 N.D. +0.8 -1.4 -0.1
solid stress Fraxetin 2 mM; solid stress -0.1 N.D. +1.0 +0.9 +0.2
stress methylglyoxal 0.032 vol% -0.2 N.D. +1.1 +0.8 +0.4
solid stress 80% Methanol 0.5 mM; solid stress +0.0 N.D. +0.6 +1.4 +0.2
solid stress Fraxetin 3 mM; solid stress +0.1 N.D. +0.9 +1.6 +0.4
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.1 N.D. +3.8 -0.3 -0.3
solid stress Fraxetin 3 mM; solid stress -0.0 N.D. +1.1 +2.2 +0.2
solid stress Fraxetin 3 mM; solid stress +0.1 N.D. +1.3 +2.0 +0.2
solid stress Fraxetin 3 mM; solid stress -0.0 N.D. +1.5 +2.4 +0.3
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