Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_01760 and PS417_01765 are separated by 12 nucleotidesPS417_01765 and PS417_01770 are separated by 129 nucleotidesPS417_01770 and PS417_01775 are separated by 153 nucleotidesPS417_01775 and PS417_01780 are separated by 103 nucleotides PS417_01760: PS417_01760 - imidazolonepropionase, at 391,604 to 392,809 _01760 PS417_01765: PS417_01765 - N-formylglutamate amidohydrolase, at 392,822 to 393,622 _01765 PS417_01770: PS417_01770 - glycine/betaine ABC transporter substrate-binding protein, at 393,752 to 394,687 _01770 PS417_01775: PS417_01775 - lipase, at 394,841 to 395,770 _01775 PS417_01780: PS417_01780 - proline iminopeptidase, at 395,874 to 396,845 _01780
Group Condition PS417_01760 PS417_01765 PS417_01770 PS417_01775 PS417_01780
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -5.9 N.D. -0.1 -0.2 +0.1
carbon source L-Histidine (C) -3.5 N.D. -0.3 +0.1 +0.0
carbon source L-Histidine (C) -3.1 N.D. -0.0 -0.1 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.8 N.D. +0.0 +0.2 -1.5
carbon source 2'-Deoxyinosine 5 mM (C) -0.9 N.D. -0.4 -0.3 -0.1
nophagecontrol TIme6-nophage -0.6 N.D. -0.4 +0.0 -0.6
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.9 N.D. -0.1 -0.2 -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 N.D. +0.3 -0.1 -1.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -0.7 N.D. -0.7 +0.2 -0.4
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.5 N.D. -0.6 -0.6 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.7 N.D. +0.5 -0.3 -0.8
soil soil sample 4; outgrowth in LB -1.1 N.D. -0.2 +0.2 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 N.D. +0.1 +0.1 -1.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 N.D. -0.9 +0.2 -0.6
motility inner cut, LB soft agar motility assay -0.8 N.D. +0.1 +0.3 -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.7 N.D. -0.1 -0.2 -0.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 N.D. -0.3 +0.3 -0.9
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x -0.8 N.D. +0.4 -0.1 +0.4
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -0.9 N.D. +0.0 -0.0 +1.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 N.D. -0.5 +0.1 +0.5
carbon source Gly-Glu (C) -0.3 N.D. -0.0 -0.2 +1.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.9 N.D. -0.0 -0.2 +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.6 N.D. -0.4 +0.4 +0.4
carbon source Gly-Glu (C) +0.3 N.D. -0.1 -0.4 +1.3
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.0 N.D. +0.4 +0.0 -0.2
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.7 N.D. +0.3 +0.1 +1.7
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.1 N.D. -0.1 -0.1 +1.5
phage P. simiae OR1 MOI 0.1 +1.2 N.D. -0.1 -0.1 +0.6
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x +0.7 N.D. +0.5 +0.1 +0.4
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.7 N.D. +0.3 -0.1 +0.1
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