Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_17715	PS417_17720	PS417_17725	PS417_17730	PS417_17735
carbon source	Xylitol (C)	+0.8	-3.4	-2.3	N.D.	-3.0
carbon source	Xylitol (C)	+0.6	-2.7	-2.0	N.D.	-3.8
phage	Wcs_1	-0.3	-0.2	-0.2	N.D.	-1.6
soil	soil sample 5; outgrowth in LB	-0.5	-0.6	+0.5	N.D.	-1.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.6	-0.1	N.D.	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.4	-0.7	-0.2	N.D.	-0.3
root	root sample 6; outgrowth in LB	-0.1	-0.3	-0.1	N.D.	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	-0.3	-0.0	N.D.	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	-2.0	+0.1	N.D.	+0.8
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	-0.4	+0.1	N.D.	-0.8
soil	soil sample 7; outgrowth in LB	-0.4	-0.1	+0.6	N.D.	-1.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.1	+0.2	-0.4	N.D.	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	-0.6	-0.1	N.D.	-0.5
seeds	Growth on radish seeds for 24 hours	-0.2	+0.3	-0.5	N.D.	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.3	-0.5	+0.3	N.D.	-0.4
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.5	+0.6	-0.1	N.D.	-0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.4	-0.4	+0.2	N.D.	+0.5
seeds	Growth on radish seeds for 72 hours	+0.1	+0.7	+0.0	N.D.	-0.9
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.3	+0.0	-0.7	N.D.	+1.1
solid stress	Fraxetin 3 mM; solid stress	-0.2	-0.3	+0.6	N.D.	+0.3
phage	P. simiae ORA MOI 1	-0.0	-0.3	-0.1	N.D.	+1.0
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.2	+0.8	-0.3	N.D.	-0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.0	+0.5	-0.1	N.D.	+0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	-0.3	+0.2	N.D.	+0.9
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	+0.3	+0.4	N.D.	+0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.0	+1.2	+0.3	N.D.	-0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.4	+0.1	+0.1	N.D.	+0.9
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.1	+0.5	-0.0	N.D.	+0.9
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.2	+0.3	+0.3	N.D.	+0.9
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.2	+0.4	+0.2	N.D.	+0.9