Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_17660	PS417_17665	PS417_17670	PS417_17675	PS417_17680
soil	soil sample 5; outgrowth in LB	-0.5	+0.2	-1.0	-0.2	-1.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	-0.6	-0.1	-0.6	-1.2
carbon source	2'-Deoxyinosine 5 mM (C)	-0.3	+0.3	+0.5	-2.4	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-0.3	-0.1	-0.9	-1.2
liquid stress	Scopoletin 3 mM; liquid stress	-0.1	-0.3	+0.4	-0.9	-1.2
phage	JP1 MOI 1	+0.3	-0.3	+0.1	-0.8	-1.2
phage	P. simiae Grant Run MOI 0.1	+0.3	-0.5	-0.3	-1.8	+0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	-0.5	+0.3	-1.0	-0.3
stress	Gentamicin 0.008 mg/ml	+0.3	-0.4	+0.5	-2.2	+0.2
soil	soil sample 6; outgrowth in LB	+0.4	-0.1	-0.1	-0.6	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	+0.5	-0.6	-0.0	-1.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	-0.0	-0.4	+0.4	+0.3	-1.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.2	-0.5	+0.2	+0.6	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	-0.6	+0.1	+0.4	-0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	-0.6	-0.6	-0.4	+0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.4	+0.1	+0.6	+0.2	-1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.4	+0.3	-0.9	+0.6	+0.1
supernatant control	Vogels_fungal_media 0.1X	+0.2	-0.2	-0.5	+1.2	-0.4
phage	P. simiae OR Antrim MOI 10	+0.1	-0.4	+0.2	-0.8	+1.2
seeds	Growth on radish seeds for 72 hours	+0.3	-0.2	-0.6	-0.1	+1.3
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.1	-0.4	+0.7	-0.5	+1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.1	-0.8	-0.2	+0.7	+1.4
seeds	Growth on radish seeds for 72 hours	-0.3	-0.1	-1.0	+2.1	+0.4
carbon source	L-Valine (C)	+0.4	-0.1	+1.0	-0.4	+0.5
seeds	Growth on radish seeds for 72 hours	+0.0	+0.0	-0.4	+1.1	+0.8
seeds	Growth on radish seeds for 24 hours	+0.1	+0.3	-0.5	+0.6	+1.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	+0.5	+0.3	-0.3	+0.8
agar plate interaction control	Taped volatile agar plate with no fungus	+0.7	-0.2	+0.6	+0.3	+0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.3	+0.3	+0.3	-0.1	+1.6
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+1.0	+0.6	+0.3	+0.4	+0.6