Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_17650	PS417_17655	PS417_17660	PS417_17665	PS417_17670
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7	N.D.	-0.3	-0.5	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.0	N.D.	-0.1	+0.0	-0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.2	N.D.	+0.1	-0.0	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.7	N.D.	-0.4	+0.2	-0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.0	N.D.	-0.2	+0.3	-0.4
nitrogen source	Uridine (N)	+0.2	N.D.	-0.6	-0.3	-0.6
phage	P. simiae Grant Run MOI 0.1	-0.5	N.D.	+0.3	-0.5	-0.3
seeds	Growth on radish seeds for 72 hours	+0.4	N.D.	-0.3	-0.1	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.3	N.D.	+0.4	-0.2	+0.3
carbon source	L-Valine (C)	-1.4	N.D.	+0.3	-0.0	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	N.D.	+0.4	-0.6	-0.6
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.7	N.D.	-0.6	-0.3	-0.6
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	-0.4	N.D.	-0.3	-0.5	+0.4
phage	P. simiae OR1 MOI 0.1	+0.5	N.D.	-0.1	-0.4	-0.8
motility	inner cut, LB soft agar motility assay	-0.4	N.D.	+0.5	-0.6	-0.2
soil	soil sample 5; outgrowth in LB	+0.7	N.D.	-0.5	+0.2	-1.0
stress	Gentamicin 0.008 mg/ml	-0.7	N.D.	+0.3	-0.4	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	N.D.	+0.3	+0.5	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	N.D.	+0.4	+0.3	-0.9
soil	soil sample 3; outgrowth in LB	+0.5	N.D.	+0.4	-0.1	-0.6
carbon source	2-Deoxy-D-ribonic lithium salt 10 mM (C)	-0.7	N.D.	+0.2	+0.4	+0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-0.3	N.D.	+0.2	-0.2	+0.9
rhizosphere	rhizosphere sample 1; outgrowth in LB	+0.6	N.D.	-0.1	-0.4	+0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.0	N.D.	+0.3	+0.3	-0.5
carbon source	L-Valine (C)	-0.1	N.D.	+0.4	-0.1	+1.0
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.3	N.D.	+1.0	+0.6	+0.3
agar plate interaction control	Taped volatile agar plate with no fungus	+0.4	N.D.	+0.7	-0.2	+0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.5	N.D.	-0.1	+0.2	+1.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7	N.D.	+0.5	+0.5	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+3.4	N.D.	-0.2	+0.4	-0.1